Mercurial > repos > cstrittmatter > test_eurl_vtec_wgs_pt
diff data/amrfinder/AMR_DNA-Escherichia.tab @ 3:0cbed1c0a762 draft default tip
planemo upload commit 15239f1674081ab51ab8dd75a9a40cf1bfaa93e8
| author | cstrittmatter |
|---|---|
| date | Tue, 28 Jan 2020 10:42:31 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data/amrfinder/AMR_DNA-Escherichia.tab Tue Jan 28 10:42:31 2020 -0500 @@ -0,0 +1,48 @@ +#accesion_version@gene_name:start-stop mutation_position mutation_symbol class subclass mutated_gene_name +NC_000913.3@16S_ribosomal_RNA:223771-225313 1192 16S_C1192T AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsH +NC_000913.3@16S_ribosomal_RNA:3941808-3943350 794 16S_A794G AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA:3941808-3943350 794 16S_A794T AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA:3941808-3943350 926 16S_G926A AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA:3941808-3943350 926 16S_G926C AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA:3941808-3943350 926 16S_G926T AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA:3941808-3943350 1519 16S_A1519C AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA:3941808-3943350 1519 16S_A1519G AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA:3941808-3943350 1519 16S_A1519T AMINOGLYCOSIDE KASUGAMYCIN Escherichia_kasugamycin_resistant_16S_rrsC +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 523 16S_A523C AMINOGLYCOSIDE STREPTOMYCIN Escherichia_streptomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 527 16S_G527T AMINOGLYCOSIDE STREPTOMYCIN Escherichia_streptomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 528 16S_C528T AMINOGLYCOSIDE STREPTOMYCIN Escherichia_streptomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 964 16S_A964G TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1053 16S_G1053A TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1054 16S_C1054T TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1055 16S_A1055G TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1058 16S_G1058C TETRACYCLINE TETRACYCLINE Escherichia_tetracycline_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1064 16S_G1064A AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1064 16S_G1064C AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1064 16S_G1064T AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1066 16S_C1066T AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1068 16S_G1068A AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1192 16S_C1192A AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1192 16S_C1192G AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1192 16S_C1192T AMINOGLYCOSIDE SPECTINOMYCIN Escherichia_spectinomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1406 16S_T1406A AMINGLYCOSIDE G418/TOBRAMYCIN Escherichia_g418/tobramycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1408 16S_A1408G AMINOGLYCOSIDE GENTAMICIN_C/NEOMYCIN/PAROMOMYCIN Escherichia_gentamicin_c/neomycin/paromomycin_resistant_16S_rrsB +NC_000913.3@16S_ribosomal_RNA:4166659-4168201 1499 16S_A1499G EDEINE EDEINE Escherichia_edeine_resistant_16S_rrsB +NC_004431.1@23S_ribosomal_RNA:237160-240064 754 23S_T754A MACROLIDE ERYTHROMYCIN/TELITHROMYCIN Escherichia_erythromycin/telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA:237160-240064 2032 23S_G2032A LINCOSAMIDE/OXAZOLIDINONE CLINDAMYCIN/LINEZOLID Escherichia_clindamycin/linezolid_resistant_23S +NC_004431.1@23S_ribosomal_RNA:237160-240064 2032 23S_G2032C OXAZOLIDINONE LINEZOLID Escherichia_linezolid_resistant_23S +NC_004431.1@23S_ribosomal_RNA:237160-240064 2032 23S_G2032T MACROLIDE/OXAZOLIDINONE CLARITHROMYCIN/LINEZOLID Escherichia_clarithromycin/linezolid_resistant_23S +NC_004431.1@23S_ribosomal_RNA:237160-240064 2057 23S_G2057A MULTIDRUG CHLORAMPHENICOL/ERYTHROMYCIN/TELITHROMYCIN Escherichia_chloramphenicol/erythromycin/telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA:237160-240064 2058 23S_A2058G MACROLIDE AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN Escherichia_azithromycin/erythromycin/telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA:237160-240064 2058 23S_A2058T MACROLIDE AZITHROMYCIN/ERYTHROMYCIN/TELITHROMYCIN Escherichia_azithromycin/erythromycin/telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA:237160-240064 2447 23S_G2447T OXAZOLIDINONE LINEZOLID Escherichia_linezolid_resistant_23S +NC_004431.1@23S_ribosomal_RNA:237160-240064 2609 23S_T2609C MACROLIDE TELITHROMYCIN Escherichia_telithromycin_resistant_23S +NC_004431.1@23S_ribosomal_RNA:237160-240064 2611 23S_C2611T MACROLIDE ERYTHROMYCIN/TELITHROMYCIN Escherichia_erythromycin/telithromycin_resistant_23S +NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489 12 ampC_C-42A BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489 12 ampC_C-42G BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489 12 ampC_C-42T BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489 22 ampC_T-32A BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489 22 ampC_T-32C BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489 22 ampC_T-32G BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489 39 ampC_G-15GG BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489 40 ampC_T-14TGT BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC +NZ_CP041538.1@ampC/blaEC_promoter_region:1149245-1149489 43 ampC_C-11T BETA-LACTAM CEPHALOSPORIN Escherichia_cephalosporin_resistant_ampC