annotate fastq2collapse.xml @ 1:64429d5e9365 draft

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author czlab
date Thu, 17 May 2018 21:32:28 -0400
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1 <tool id="fastq2collapse" name="Collapse exact PCR duplicates">
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2 <description>in FASTQ</description>
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3 <!--<command interpreter="perl">-->
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4 <command>
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5 fastq2collapse.pl -v $input $output
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6 </command>
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7 <inputs>
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8 <param type="data" format="fastq" name="input" label="Input FASTQ file (.gz file accepted)"/>
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9 </inputs>
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11 <outputs>
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12 <data name="output" format="fastq" label="Collapse exact PCR duplicates on ${on_string}" />
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13 </outputs>
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15 <help>
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17 .. class:: infomark
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19 **What this tool does**
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21 This tool collapses exact duplicate sequences.
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23 It takes as input files in FASTQ format of filtered and trimmed reads and output files in FASTQ format in which exact PCR duplicates have been collapsed.
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28 </help>
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29 </tool>
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