Mercurial > repos > damion > ffp_phylogeny

comparison ffp_phylogeny.py @ 3:79a4a86981d3 draft default tip

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author damion
date Thu, 23 Apr 2015 17:47:39 -0400
parents 671667722d3d
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2:671667722d3d 3:79a4a86981d3
243 243
244 parser.add_option('-s', '--similarity', dest='similarity', default=False, action='store_true', 244 parser.add_option('-s', '--similarity', dest='similarity', default=False, action='store_true',
245 help='Enables pearson correlation coefficient matrix and any of the binary distance measures to be turned into similarity matrixes.') 245 help='Enables pearson correlation coefficient matrix and any of the binary distance measures to be turned into similarity matrixes.')
246 246
247 parser.add_option('-f', '--filter', type='choice', dest='filter', default='none', 247 parser.add_option('-f', '--filter', type='choice', dest='filter', default='none',
248 choices=['none','f','n','e','freq','norm','evd'], 248 choices=['none','count','f','n','e','freq','norm','evd'],
249 help='Choice of [f=raw frequency|n=normal|e=extreme value (Gumbel)] distribution: Features are trimmed from the data based on lower/upper cutoff points according to the given distribution.') 249 help='Choice of [f=raw frequency|n=normal|e=extreme value (Gumbel)] distribution: Features are trimmed from the data based on lower/upper cutoff points according to the given distribution.')
250 250
251 parser.add_option('-L', '--lower', type='float', dest='lower', 251 parser.add_option('-L', '--lower', type='float', dest='lower',
252 help='Filter lower bound is a 0.00 percentages') 252 help='Filter lower bound is a 0.00 percentages')
253 253