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annotate ICGC_STAR_ALIGNMENT_PIPELINE/ICGC_pipeline_RUN.sh @ 0:be0f5f54462d draft default tip

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author daumsoft
date Mon, 10 Sep 2018 01:20:03 -0400
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1 #!/bin/bash
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2
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3 if [ "$#" -ne 1 ]; then
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4 echo "[usage:] ICGC_pipeline_RUN.sh tar.gz(fastq in file)"
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5 exit 1;
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6 fi
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7
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8 INPUT_TAR_GZ=$1
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9
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10 ln -s $INPUT_TAR_GZ ${INPUT_TAR_GZ}.tar.gz
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11 INPUT_TAR_GZ=${INPUT_TAR_GZ}.tar.gz
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12
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13 $GALAXY_HOME/package/DAUMSOFT/RNA-seq/ICGC_STAR_ALIGNMENT_PIPELINE/ICGC_pipeline.sh $INPUT_TAR_GZ > log.out 2>&1
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