Mercurial > repos > daumsoft > test11
annotate ICGC_STAR_ALIGNMENT_PIPELINE/ICGC_pipeline_RUN.sh @ 0:0ea9868b554c draft default tip
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| author | daumsoft |
|---|---|
| date | Mon, 10 Sep 2018 01:15:58 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/bin/bash |
| 2 | |
| 3 if [ "$#" -ne 1 ]; then | |
| 4 echo "[usage:] ICGC_pipeline_RUN.sh tar.gz(fastq in file)" | |
| 5 exit 1; | |
| 6 fi | |
| 7 | |
| 8 INPUT_TAR_GZ=$1 | |
| 9 | |
| 10 ln -s $INPUT_TAR_GZ ${INPUT_TAR_GZ}.tar.gz | |
| 11 INPUT_TAR_GZ=${INPUT_TAR_GZ}.tar.gz | |
| 12 | |
| 13 $GALAXY_HOME/package/DAUMSOFT/RNA-seq/ICGC_STAR_ALIGNMENT_PIPELINE/ICGC_pipeline.sh $INPUT_TAR_GZ > log.out 2>&1 | |
| 14 |