Mercurial > repos > dave > data_manager_build_kraken2_database
annotate data_manager_conf.xml @ 0:bd47b9f87d67 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
author | dave |
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date | Tue, 01 Dec 2020 16:07:40 +0000 |
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0
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
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changeset
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1 <data_managers> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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2 <data_manager tool_file="data_manager/kraken2_build_database.xml" id="kraken2_build_database" version="2.0.8_beta+galaxy1"> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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3 <data_table name="kraken2_databases"> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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4 <output> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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5 <column name="value"/> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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6 <column name="name"/> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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7 <column name="path" output_ref="out_file"> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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8 <move type="directory"> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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9 <source>${path}</source> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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10 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">kraken2_databases/${path}</target> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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11 </move> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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12 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/kraken2_databases/${path}</value_translation> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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13 <value_translation type="function">abspath</value_translation> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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14 </column> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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15 </output> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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16 </data_table> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
changeset
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17 </data_manager> |
bd47b9f87d67
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_kraken2_database/ commit 68cd9a8ae50c5dfe6b667062a5172010511bcaff-dirty"
dave
parents:
diff
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18 </data_managers> |