Mercurial > repos > dave > data_manager_fetch_index_maf
annotate data_manager_conf.xml @ 0:de73b258a601 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
author | dave |
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date | Wed, 15 Jul 2020 14:30:00 -0400 |
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children | edf39ed96bc3 |
rev | line source |
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0
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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1 <?xml version="1.0"?> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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changeset
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2 <data_managers tool_path="tools"> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
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3 <data_manager tool_file="data_manager_fetch_index_maf/data_manager/data_manager_fetch_and_index_maf.xml" id="data_manager_fetch_and_index_maf"> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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4 <data_table name="indexed_maf_files"> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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changeset
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5 <output> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
diff
changeset
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6 <column name="name" /> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
diff
changeset
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7 <column name="value" /> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
diff
changeset
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8 <column name="indexed_for" /> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
diff
changeset
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9 <column name="exists_in_maf" /> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
diff
changeset
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10 <column name="path" output_ref="output" > |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
diff
changeset
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11 <move type="directory" relativize_symlinks="True"> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/align/${value}</target> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
diff
changeset
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13 </move> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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changeset
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14 <value_translation>#echo ','.join([os.path.join($GALAXY_DATA_MANAGER_DATA_PATH, '%s' % dbkey, 'align', '%s' % $value, $filename) for filename in $path.split(',')])</value_translation> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
diff
changeset
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15 <value_translation type="function">abspath</value_translation> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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16 </column> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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17 </output> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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18 </data_table> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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19 </data_manager> |
de73b258a601
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit 21852ee28cf191d12b1ffe5583efaa5deeb1d80d-dirty"
dave
parents:
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20 </data_managers> |