Mercurial > repos > dave > data_manager_fetch_index_maf
comparison data_manager/data_manager_fetch_and_index_maf.py @ 1:edf39ed96bc3 draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit f8a19615cd097290a1239d4bb6b8eb52c9d73b03-dirty"
| author | dave |
|---|---|
| date | Wed, 15 Jul 2020 15:50:54 -0400 |
| parents | de73b258a601 |
| children |
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| 0:de73b258a601 | 1:edf39ed96bc3 |
|---|---|
| 186 maf_path = urllib.parse.urljoin(options.nexus, 'maf/') | 186 maf_path = urllib.parse.urljoin(options.nexus, 'maf/') |
| 187 maf_files = get_maf_listing(maf_path) | 187 maf_files = get_maf_listing(maf_path) |
| 188 | 188 |
| 189 data_manager_entry = { | 189 data_manager_entry = { |
| 190 'data_tables': { | 190 'data_tables': { |
| 191 'indexed_maf_files': { | 191 'maf_indexes': { |
| 192 'name': display_name, | 192 'name': display_name, |
| 193 'dbkey': options.dbkey, # This is needed for the output path | 193 'dbkey': options.dbkey, # This is needed for the output path |
| 194 'value': uid, | 194 'value': uid, |
| 195 'indexed_for': ','.join(species_list), | 195 'indexed_for': ','.join(species_list), |
| 196 'exists_in_maf': ','.join(species_list), | 196 'exists_in_maf': ','.join(species_list), |