# HG changeset patch
# User dave
# Date 1594842654 14400
# Node ID edf39ed96bc3f84470a6897489e66738d8c3a702
# Parent  de73b258a60153246799d85828e895673ad4e101
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_index_maf commit f8a19615cd097290a1239d4bb6b8eb52c9d73b03-dirty"

diff -r de73b258a601 -r edf39ed96bc3 data_manager/data_manager_fetch_and_index_maf.py
--- a/data_manager/data_manager_fetch_and_index_maf.py	Wed Jul 15 14:30:00 2020 -0400
+++ b/data_manager/data_manager_fetch_and_index_maf.py	Wed Jul 15 15:50:54 2020 -0400
@@ -188,7 +188,7 @@
 
     data_manager_entry = {
         'data_tables': {
-            'indexed_maf_files': {
+            'maf_indexes': {
                 'name': display_name,
                 'dbkey': options.dbkey,  # This is needed for the output path
                 'value': uid,
diff -r de73b258a601 -r edf39ed96bc3 data_manager/data_manager_fetch_and_index_maf.xml
--- a/data_manager/data_manager_fetch_and_index_maf.xml	Wed Jul 15 14:30:00 2020 -0400
+++ b/data_manager/data_manager_fetch_and_index_maf.xml	Wed Jul 15 15:50:54 2020 -0400
@@ -1,4 +1,4 @@
-<tool id="data_manager_fetch_and_index_maf" name="Fetch and index" version="1.0.0" tool_type="manage_data" profile="19.01">
+<tool id="data_manager_fetch_and_index_maf" name="Fetch and index" version="1.1.0" tool_type="manage_data" profile="19.01">
     <description>multiple alignments from UCSC</description>
     <requirements>
         <requirement type="package" version="3.7">python</requirement>
diff -r de73b258a601 -r edf39ed96bc3 data_manager_conf.xml
--- a/data_manager_conf.xml	Wed Jul 15 14:30:00 2020 -0400
+++ b/data_manager_conf.xml	Wed Jul 15 15:50:54 2020 -0400
@@ -1,7 +1,7 @@
 <?xml version="1.0"?>
 <data_managers tool_path="tools">
     <data_manager tool_file="data_manager_fetch_index_maf/data_manager/data_manager_fetch_and_index_maf.xml" id="data_manager_fetch_and_index_maf">
-        <data_table name="indexed_maf_files">
+        <data_table name="maf_indexes">
             <output>
                 <column name="name" />
                 <column name="value" />
@@ -11,10 +11,10 @@
                     <move type="directory" relativize_symlinks="True">
                         <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/align/${value}</target>
                     </move>
-                    <value_translation>#echo ','.join([os.path.join($GALAXY_DATA_MANAGER_DATA_PATH, '%s' % dbkey, 'align', '%s' % $value, $filename) for filename in $path.split(',')])</value_translation>
+                    <value_translation>#echo ','.join([os.path.join(${GALAXY_DATA_MANAGER_DATA_PATH}, '%s' % ${dbkey}, 'align', '%s' % ${value}, ${filename}) for filename in $path.split(',')])</value_translation>
                     <value_translation type="function">abspath</value_translation>
                 </column>
             </output>
         </data_table>
     </data_manager>
-</data_managers>
\ No newline at end of file
+</data_managers>
diff -r de73b258a601 -r edf39ed96bc3 tool-data/maf_index.loc.sample
--- a/tool-data/maf_index.loc.sample	Wed Jul 15 14:30:00 2020 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,17 +0,0 @@
-#This is a sample file distributed with Galaxy that is used by some
-#alignment tools.  The maf_index.loc file has this format (white space 
-#characters are TAB characters):
-#
-#<Display_name UID>	<indexed_for:build1,build2,build3>	<exists_in_maf:build1,build2,build3>	<Comma_Separated_List_of_Full_Paths_To_Files>
-#
-#ENCODE TBA (hg17)	ENCODE_TBA_hg17	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant,fr1,galago,hedgehog,hg17,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant,fr1,galago,hedgehog,hg17,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm001/human.ENm001.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm002/human.ENm002.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm003/human.ENm003.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm004/human.ENm004.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm005/human.ENm005.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm006/human.ENm006.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm007/human.ENm007.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm008/human.ENm008.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm009/human.ENm009.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm010/human.ENm010.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm011/human.ENm011.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm012/human.ENm012.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm013/human.ENm013.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm014/human.ENm014.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr111/human.ENr111.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr112/human.ENr112.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr113/human.ENr113.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr114/human.ENr114.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr121/human.ENr121.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr122/human.ENr122.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr123/human.ENr123.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr131/human.ENr131.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr132/human.ENr132.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr133/human.ENr133.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr211/human.ENr211.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr212/human.ENr212.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr213/human.ENr213.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr221/human.ENr221.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr222/human.ENr222.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr223/human.ENr223.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr231/human.ENr231.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr232/human.ENr232.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr233/human.ENr233.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr311/human.ENr311.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr312/human.ENr312.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr313/human.ENr313.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr321/human.ENr321.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr322/human.ENr322.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr323/human.ENr323.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr324/human.ENr324.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr331/human.ENr331.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr332/human.ENr332.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr333/human.ENr333.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr334/human.ENr334.maf
-#ENCODE MAVID (hg17)	ENCODE_MAVID_hg17	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant,fr1,galago,hedgehog,hg17,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant,fr1,galago,hedgehog,hg17,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm001.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm002.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm003.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm004.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm005.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm006.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm007.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm008.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm009.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm010.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm011.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm012.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm013.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm014.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr111.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr112.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr113.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr114.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr121.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr122.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr123.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr131.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr132.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr133.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr211.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr212.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr213.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr221.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr222.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr223.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr231.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr232.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr233.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr311.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr312.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr313.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr321.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr322.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr323.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr324.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr331.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr332.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr333.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr334.maf
-#ENCODE TBA (hg16)	ENCODE_TBA_hg16	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant=elephant,fr1,galago,hedgehog,hg16,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant=elephant,fr1,galago,hedgehog,hg16,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm001.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm002.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm003.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm004.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm005.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm006.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm007.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm008.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm009.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm010.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm011.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm012.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm013.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm014.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr111.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr112.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr113.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr114.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr121.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr122.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr123.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr131.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr132.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr133.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr211.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr212.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr213.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr221.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr222.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr223.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr231.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr232.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr233.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr311.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr312.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr313.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr321.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr322.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr323.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr324.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr331.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr332.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr333.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr334.maf
-#8-way multiZ (hg17)	8_WAY_MULTIZ_hg17	canFam1,danRer1,fr1,galGal2,hg17,mm5,panTro1,rn3	canFam1,danRer1,fr1,galGal2,hg17,mm5,panTro1,rn3	/depot/data2/galaxy/hg17/align/8way-multiZ/chr1.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr10.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr11.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr12.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr12_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr13.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr14.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr15.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr16.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr17.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr18.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr19.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr2.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr20.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr21.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr22.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr3.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr4.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr5.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6_hla_hap1.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6_hla_hap2.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr7.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr8.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr9.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrM.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrX.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrY.maf
-#17-way multiZ (hg18)	17_WAY_MULTIZ_hg18	hg18,panTro1,bosTau2,rheMac2,mm8,rn4,canFam2,echTel1,loxAfr1,oryCun1,danRer3,monDom4,dasNov1,galGal2,fr1,tetNig1,xenTro1	hg18,panTro1,bosTau2,rheMac2,mm8,rn4,canFam2,echTel1,loxAfr1,oryCun1,danRer3,monDom4,dasNov1,galGal2,fr1,tetNig1,xenTro1	/depot/data2/galaxy/hg18/align/17way-multiZ/chr10.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr11.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr11_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr12.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr13.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr14.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr15.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr16.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr17.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr18.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr19.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr20.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr21.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr21_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr22_h2_hap1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr22.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr2.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr3.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr4.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr5_h2_hap1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr5.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6_cox_hap1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6_qbl_hap2.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr7.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr8.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr9.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrM.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrX.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrY.maf
-#3-way multiZ (hg18,panTro2,rheMac2)	3_WAY_MULTIZ_hg18	hg18,panTro2,rheMac2	hg18,panTro2,rheMac2	/depot/data2/galaxy/hg18/align/3way-multiZ/chr10.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr11.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr11_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr12.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr13.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr14.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr15.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr16.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr17.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr18.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr19.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr20.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr21.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr21_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr22_h2_hap1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr22.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr2.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr3.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr4.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr5_h2_hap1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr5.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6_cox_hap1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6_qbl_hap2.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr7.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr8.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr9.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrM.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrX.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrY.maf
-#5-way multiZ (hg18,panTro2,rheMac2,mm8,canFam2)	5_WAY_MULTIZ_hg18	hg18,panTro2,rheMac2,mm8,canFam2	hg18,panTro2,rheMac2,mm8,canFam2	/depot/data2/galaxy/hg18/align/5way-multiZ/chr10.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr11.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr11_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr12.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr13.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr14.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr15.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr16.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr17.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr18.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr19.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr20.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr21.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr21_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr22_h2_hap1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr22.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr2.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr3.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr4.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr5_h2_hap1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr5.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6_cox_hap1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6_qbl_hap2.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr7.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr8.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr9.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrM.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrX.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrY.maf
-#28-way multiZ (hg18)	28_WAY_MULTIZ_hg18	hg18	hg18,dasNov1,otoGar1,felCat3,galGal3,panTro2,bosTau3,canFam2,loxAfr1,xenTro2,fr2,cavPor2,eriEur1,equCab1,anoCar1,oryLat1,mm8,monDom4,ornAna1,oryCun1,rn4,rheMac2,sorAra1,gasAcu1,echTel1,tetNig1,tupBel1,danRer4	/depot/data2/galaxy/hg18/align/multiz28way/chr1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr10.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr10_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr11.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr11_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr12.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr13.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr13_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr14.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr15.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr15_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr16.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr16_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr17.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr17_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr18.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr18_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr19.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr19_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr1_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr2.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr20.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr21.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr21_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr22.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr22_h2_hap1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr22_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr2_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr3.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr3_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr4.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr4_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr5.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr5_h2_hap1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr5_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6_cox_hap1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6_qbl_hap2.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr7.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr7_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr8.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr8_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr9.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr9_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrM.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrX.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrX_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrY.maf.lzo
-#15-way multiZ (dm2)	15_WAY_MULTIZ_dm2	dm2,droSim1,droSec1,droYak2,droEre2,droAna3,dp4,droPer1,droWil1,droVir3,droMoj3,droGri2,anoGam1,apiMel2,triCas2	dm2,droSim1,droSec1,droYak2,droEre2,droAna3,dp4,droPer1,droWil1,droVir3,droMoj3,droGri2,anoGam1,apiMel2,triCas2	/depot/data2/galaxy/dm2/align/multiz15way/chr2L.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr2R.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr2h.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr3L.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr3R.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr3h.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr4.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr4h.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrM.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrU.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrX.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrXh.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrYh.maf
-#17-way multiZ (mm8)	17_WAY_MULTIZ_mm8	mm8	hg18,panTro1,bosTau2,rheMac2,mm8,rn4,canFam2,echTel1,loxAfr1,oryCun1,danRer3,monDom4,dasNov1,galGal2,fr1,tetNig1,xenTro1	/depot/data2/galaxy/mm8/align/multiz17way/chr10.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr10_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr11.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr12.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr13.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr13_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr14.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr15.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr15_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr16.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr17.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr17_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr18.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr19.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr1.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr1_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr2.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr3.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr4.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr5.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr5_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr6.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr7.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr7_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr8.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr8_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr9.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr9_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrM.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrUn_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrX.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrX_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrY.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrY_random.maf.lzo
-#8-way multiZ (ponAbe2)	8_WAY_MULTIZ_ponAbe2	ponAbe2,hg18,panTro2,rheMac2,calJac1,mm9,monDom4,ornAna1	ponAbe2,hg18,panTro2,rheMac2,calJac1,mm9,monDom4,ornAna1	/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr10.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr10_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr11.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr11_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr12.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr12_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr13.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr13_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr14.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr14_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr15.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr15_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr16.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr16_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr17.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr17_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr18.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr18_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr19.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr19_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr1.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr1_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr20.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr20_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr21.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr21_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr22.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr22_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2a.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2a_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2b.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2b_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr3.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr3_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr4.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr4_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr5_h2_hap1.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr5.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr5_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_cox_hap1.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_cox_hap1_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_qbl_hap2.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_qbl_hap2_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr7.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr7_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr8.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr8_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr9.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr9_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrM.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrUn.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrX.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrX_random.maf.lzo
diff -r de73b258a601 -r edf39ed96bc3 tool-data/maf_indexes.loc.sample
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/maf_indexes.loc.sample	Wed Jul 15 15:50:54 2020 -0400
@@ -0,0 +1,17 @@
+#This is a sample file distributed with Galaxy that is used by some
+#alignment tools.  The maf_index.loc file has this format (white space 
+#characters are TAB characters):
+#
+#<Display_name UID>	<indexed_for:build1,build2,build3>	<exists_in_maf:build1,build2,build3>	<Comma_Separated_List_of_Full_Paths_To_Files>
+#
+#ENCODE TBA (hg17)	ENCODE_TBA_hg17	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant,fr1,galago,hedgehog,hg17,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant,fr1,galago,hedgehog,hg17,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm001/human.ENm001.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm002/human.ENm002.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm003/human.ENm003.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm004/human.ENm004.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm005/human.ENm005.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm006/human.ENm006.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm007/human.ENm007.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm008/human.ENm008.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm009/human.ENm009.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm010/human.ENm010.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm011/human.ENm011.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm012/human.ENm012.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm013/human.ENm013.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENm014/human.ENm014.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr111/human.ENr111.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr112/human.ENr112.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr113/human.ENr113.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr114/human.ENr114.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr121/human.ENr121.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr122/human.ENr122.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr123/human.ENr123.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr131/human.ENr131.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr132/human.ENr132.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr133/human.ENr133.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr211/human.ENr211.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr212/human.ENr212.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr213/human.ENr213.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr221/human.ENr221.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr222/human.ENr222.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr223/human.ENr223.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr231/human.ENr231.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr232/human.ENr232.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr233/human.ENr233.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr311/human.ENr311.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr312/human.ENr312.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr313/human.ENr313.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr321/human.ENr321.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr322/human.ENr322.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr323/human.ENr323.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr324/human.ENr324.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr331/human.ENr331.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr332/human.ENr332.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr333/human.ENr333.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/tba/ENr334/human.ENr334.maf
+#ENCODE MAVID (hg17)	ENCODE_MAVID_hg17	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant,fr1,galago,hedgehog,hg17,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant,fr1,galago,hedgehog,hg17,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm001.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm002.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm003.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm004.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm005.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm006.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm007.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm008.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm009.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm010.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm011.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm012.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm013.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENm014.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr111.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr112.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr113.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr114.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr121.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr122.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr123.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr131.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr132.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr133.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr211.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr212.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr213.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr221.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr222.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr223.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr231.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr232.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr233.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr311.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr312.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr313.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr321.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr322.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr323.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr324.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr331.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr332.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr333.maf,/depot/data2/galaxy/hg17/align/encode_relabeled/mavid/abs/ENr334.maf
+#ENCODE TBA (hg16)	ENCODE_TBA_hg16	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant=elephant,fr1,galago,hedgehog,hg16,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	armadillo,baboon,galGal2,panTro1,colobus_monkey,cow,canFam1,dusky_titi,elephant=elephant,fr1,galago,hedgehog,hg16,rheMac1,marmoset,monDom1,mm6,mouse_lemur,owl_monkey,platypus,rabbit,rn3,rfbat,shrew,tenrec,tetNig1,xenTro1,danRer2	/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm001.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm002.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm003.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm004.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm005.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm006.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm007.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm008.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm009.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm010.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm011.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm012.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm013.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENm014.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr111.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr112.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr113.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr114.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr121.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr122.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr123.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr131.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr132.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr133.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr211.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr212.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr213.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr221.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr222.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr223.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr231.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr232.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr233.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr311.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr312.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr313.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr321.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr322.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr323.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr324.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr331.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr332.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr333.maf,/depot/data2/galaxy/hg16/align/encode/june2005freeze/tba/human.ENr334.maf
+#8-way multiZ (hg17)	8_WAY_MULTIZ_hg17	canFam1,danRer1,fr1,galGal2,hg17,mm5,panTro1,rn3	canFam1,danRer1,fr1,galGal2,hg17,mm5,panTro1,rn3	/depot/data2/galaxy/hg17/align/8way-multiZ/chr1.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr10.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr11.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr12.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr12_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr13.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr14.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr15.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr16.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr17.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr18.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr19.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr2.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr20.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr21.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr22.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr3.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr4.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr5.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6_hla_hap1.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6_hla_hap2.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr7.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr8.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr9.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrM.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrX.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg17/align/8way-multiZ/chrY.maf
+#17-way multiZ (hg18)	17_WAY_MULTIZ_hg18	hg18,panTro1,bosTau2,rheMac2,mm8,rn4,canFam2,echTel1,loxAfr1,oryCun1,danRer3,monDom4,dasNov1,galGal2,fr1,tetNig1,xenTro1	hg18,panTro1,bosTau2,rheMac2,mm8,rn4,canFam2,echTel1,loxAfr1,oryCun1,danRer3,monDom4,dasNov1,galGal2,fr1,tetNig1,xenTro1	/depot/data2/galaxy/hg18/align/17way-multiZ/chr10.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr11.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr11_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr12.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr13.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr14.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr15.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr16.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr17.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr18.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr19.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr20.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr21.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr21_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr22_h2_hap1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr22.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr2.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr3.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr4.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr5_h2_hap1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr5.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6_cox_hap1.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6_qbl_hap2.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr7.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr8.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr9.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrM.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrX.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg18/align/17way-multiZ/chrY.maf
+#3-way multiZ (hg18,panTro2,rheMac2)	3_WAY_MULTIZ_hg18	hg18,panTro2,rheMac2	hg18,panTro2,rheMac2	/depot/data2/galaxy/hg18/align/3way-multiZ/chr10.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr11.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr11_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr12.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr13.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr14.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr15.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr16.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr17.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr18.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr19.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr20.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr21.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr21_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr22_h2_hap1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr22.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr2.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr3.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr4.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr5_h2_hap1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr5.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6_cox_hap1.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6_qbl_hap2.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr7.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr8.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr9.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrM.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrX.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg18/align/3way-multiZ/chrY.maf
+#5-way multiZ (hg18,panTro2,rheMac2,mm8,canFam2)	5_WAY_MULTIZ_hg18	hg18,panTro2,rheMac2,mm8,canFam2	hg18,panTro2,rheMac2,mm8,canFam2	/depot/data2/galaxy/hg18/align/5way-multiZ/chr10.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr10_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr11.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr11_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr12.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr13.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr13_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr14.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr15.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr15_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr16.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr16_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr17.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr17_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr18.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr18_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr19.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr19_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr1_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr20.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr21.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr21_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr22_h2_hap1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr22.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr22_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr2.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr2_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr3.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr3_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr4.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr4_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr5_h2_hap1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr5.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr5_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6_cox_hap1.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6_qbl_hap2.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr6_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr7.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr7_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr8.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr8_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr9.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chr9_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrM.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrX.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrX_random.maf,/depot/data2/galaxy/hg18/align/5way-multiZ/chrY.maf
+#28-way multiZ (hg18)	28_WAY_MULTIZ_hg18	hg18	hg18,dasNov1,otoGar1,felCat3,galGal3,panTro2,bosTau3,canFam2,loxAfr1,xenTro2,fr2,cavPor2,eriEur1,equCab1,anoCar1,oryLat1,mm8,monDom4,ornAna1,oryCun1,rn4,rheMac2,sorAra1,gasAcu1,echTel1,tetNig1,tupBel1,danRer4	/depot/data2/galaxy/hg18/align/multiz28way/chr1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr10.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr10_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr11.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr11_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr12.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr13.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr13_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr14.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr15.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr15_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr16.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr16_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr17.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr17_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr18.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr18_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr19.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr19_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr1_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr2.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr20.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr21.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr21_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr22.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr22_h2_hap1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr22_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr2_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr3.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr3_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr4.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr4_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr5.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr5_h2_hap1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr5_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6_cox_hap1.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6_qbl_hap2.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr6_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr7.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr7_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr8.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr8_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr9.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chr9_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrM.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrX.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrX_random.maf.lzo,/depot/data2/galaxy/hg18/align/multiz28way/chrY.maf.lzo
+#15-way multiZ (dm2)	15_WAY_MULTIZ_dm2	dm2,droSim1,droSec1,droYak2,droEre2,droAna3,dp4,droPer1,droWil1,droVir3,droMoj3,droGri2,anoGam1,apiMel2,triCas2	dm2,droSim1,droSec1,droYak2,droEre2,droAna3,dp4,droPer1,droWil1,droVir3,droMoj3,droGri2,anoGam1,apiMel2,triCas2	/depot/data2/galaxy/dm2/align/multiz15way/chr2L.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr2R.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr2h.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr3L.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr3R.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr3h.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr4.maf,/depot/data2/galaxy/dm2/align/multiz15way/chr4h.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrM.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrU.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrX.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrXh.maf,/depot/data2/galaxy/dm2/align/multiz15way/chrYh.maf
+#17-way multiZ (mm8)	17_WAY_MULTIZ_mm8	mm8	hg18,panTro1,bosTau2,rheMac2,mm8,rn4,canFam2,echTel1,loxAfr1,oryCun1,danRer3,monDom4,dasNov1,galGal2,fr1,tetNig1,xenTro1	/depot/data2/galaxy/mm8/align/multiz17way/chr10.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr10_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr11.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr12.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr13.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr13_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr14.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr15.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr15_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr16.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr17.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr17_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr18.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr19.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr1.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr1_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr2.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr3.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr4.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr5.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr5_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr6.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr7.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr7_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr8.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr8_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr9.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chr9_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrM.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrUn_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrX.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrX_random.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrY.maf.lzo,/depot/data2/galaxy/mm8/align/multiz17way/chrY_random.maf.lzo
+#8-way multiZ (ponAbe2)	8_WAY_MULTIZ_ponAbe2	ponAbe2,hg18,panTro2,rheMac2,calJac1,mm9,monDom4,ornAna1	ponAbe2,hg18,panTro2,rheMac2,calJac1,mm9,monDom4,ornAna1	/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr10.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr10_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr11.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr11_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr12.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr12_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr13.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr13_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr14.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr14_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr15.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr15_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr16.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr16_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr17.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr17_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr18.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr18_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr19.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr19_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr1.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr1_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr20.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr20_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr21.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr21_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr22.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr22_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2a.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2a_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2b.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr2b_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr3.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr3_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr4.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr4_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr5_h2_hap1.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr5.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr5_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_cox_hap1.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_cox_hap1_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_qbl_hap2.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_qbl_hap2_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr6_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr7.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr7_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr8.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr8_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr9.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chr9_random.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrM.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrUn.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrX.maf.lzo,/depot/data2/galaxy/ponAbe2/align/multiz8way/maf/chrX_random.maf.lzo
diff -r de73b258a601 -r edf39ed96bc3 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Wed Jul 15 14:30:00 2020 -0400
+++ b/tool_data_table_conf.xml.sample	Wed Jul 15 15:50:54 2020 -0400
@@ -1,8 +1,8 @@
 <!-- Paths are relative to the value of `tool_data_path` in galaxy.ini -->
 <tables>
     <!-- Locations of MAF files that have been indexed with bx-python -->
-    <table name="indexed_maf_files">
+    <table name="maf_indexes">
         <columns>name, value, indexed_for, exists_in_maf, path</columns>
-        <file path="maf_index.loc" />
+        <file path="maf_indexes.loc" />
     </table>
 </tables>