Mercurial > repos > david-hoover > mirdeep2_and_targetspy_dh

diff target_spy_wrapper.sh @ 0:17e442abb3de draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author david-hoover
date Wed, 23 Jul 2014 10:27:07 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/target_spy_wrapper.sh	Wed Jul 23 10:27:07 2014 -0400
@@ -0,0 +1,4 @@
+export PATH=/data/galaxy/appList/ViennaRNA/1.6.1/bin:/data/galaxy/appList/TargetSpy/bin:$PATH
+
+TargetSpy -microRNAs $1 -transcripts $2 -result targets
+gunzip targets.gz