Mercurial > repos > davidecangelosi > pipe_t

comparison docker/Dockerfile @ 12:11393eb1c557 draft

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planemo upload for repository https://github.com/igg-molecular-biology-lab/pipe-t.git commit d1be332a7da0e53b3e6451f0aeda0675f190dd64
author davidecangelosi
date Thu, 16 May 2019 10:34:26 -0400
parents ecd0a79e8130
children 5e8bf316343d
comparison
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11:d6e062f6d462 12:11393eb1c557
6 6
7 MAINTAINER D. CANGELOSI, davidecangelosi@gaslini.org 7 MAINTAINER D. CANGELOSI, davidecangelosi@gaslini.org
8 8
9 ENV GALAXY_CONFIG_BRAND="Galaxy PIPE-T" 9 ENV GALAXY_CONFIG_BRAND="Galaxy PIPE-T"
10 ENV ENABLE_TTS_INSTALL True 10 ENV ENABLE_TTS_INSTALL True
11 11
12 RUN apt-get -y update 12 RUN apt-get -y update
13 RUN apt-get install -y libxml2-dev libcurl4-openssl-dev curl libcairo2-dev 13 RUN apt-get install -y libxml2-dev libcurl4-openssl-dev curl libcairo2-dev
14 14
15 #Workaround for ubuntu 15 #Workaround for ubuntu
16 #RUN cp /etc/ssl/private/ssl-cert-snakeoil.key /etc/ 16 #RUN cp /etc/ssl/private/ssl-cert-snakeoil.key /etc/
17 #RUN chown root:ssl-cert /etc/ssl-cert-snakeoil.key 17 #RUN chown root:ssl-cert /etc/ssl-cert-snakeoil.key
18 #RUN sed -i -e "s/\/ssl\/private//g" /etc/postgresql/9.3/main/postgresql.conf 18 #RUN sed -i -e "s/\/ssl\/private//g" /etc/postgresql/9.3/main/postgresql.conf
19 ADD docker/galaxy.yml /etc/galaxy/galaxy.yml
20 # ADD docker/dependency_resolvers_conf.yml /etc/galaxy/dependency_resolvers_conf.yml
21 ADD docker/dependency_resolvers_conf.yml $GALAXY_ROOT/config/dependency_resolvers_conf.yml
22
19 23
20 #install pipe_t from toolshed 24 #install pipe_t from toolshed
21 ADD tools.yml $GALAXY_ROOT/tools.yaml 25 ADD docker/tools.yml $GALAXY_ROOT/tools.yaml
22 RUN install-tools $GALAXY_ROOT/tools.yaml && \ 26 RUN install-tools $GALAXY_ROOT/tools.yaml && \
23 /tool_deps/_conda/bin/conda clean --all --yes 27 /tool_deps/_conda/bin/conda clean --all --yes
24 28
25 #RUN chown galaxy:galaxy /usr/local/lib/R/site-library 29 #RUN chown galaxy:galaxy /usr/local/lib/R/site-library
26 30