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comparison pipe-t.xml @ 27:5618ea415c4a draft

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planemo upload for repository https://github.com/igg-molecular-biology-lab/pipe-t.git commit 157954c8b7e2c009e0e40a3a7e19ede7cab0de9e
author davidecangelosi
date Fri, 31 May 2019 10:25:13 -0400
parents 2a6088c11d42
children 7fbfe6f424f0
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26:f008adc272a2 27:5618ea415c4a
8 <requirement type="package" version="3.8.0">bioconductor-rankprod</requirement> 8 <requirement type="package" version="3.8.0">bioconductor-rankprod</requirement>
9 <requirement type="package" version="1.56.0">bioconductor-impute</requirement> 9 <requirement type="package" version="1.56.0">bioconductor-impute</requirement>
10 <requirement type="package" version="1.11.0">r-bbmisc</requirement> 10 <requirement type="package" version="1.11.0">r-bbmisc</requirement>
11 <requirement type="package" version="1.8.4">r-psych</requirement> 11 <requirement type="package" version="1.8.4">r-psych</requirement>
12 <requirement type="package" version="1.8_3">r-zoo</requirement> 12 <requirement type="package" version="1.8_3">r-zoo</requirement>
13 <requirement type="package" version="4.1_1">r-hmisc</requirement>
14 <requirement type="package" version="1.28.0">bioconductor-normqpcr </requirement> 13 <requirement type="package" version="1.28.0">bioconductor-normqpcr </requirement>
15 </requirements> 14 </requirements>
16 <stdio> 15 <stdio>
17 <exit_code range="1:" /> 16 <exit_code range="1:" />
18 </stdio> 17 </stdio>
212 </param> 211 </param>
213 <conditional name="condImpute"> 212 <conditional name="condImpute">
214 <param name="format" type="select" label="Select one of the imputation methods from the list below." help=""> 213 <param name="format" type="select" label="Select one of the imputation methods from the list below." help="">
215 <option value="mestdagh" selected="true">Mestdagh</option> 214 <option value="mestdagh" selected="true">Mestdagh</option>
216 <option value="knn">K-Nearest Neighbour</option> 215 <option value="knn">K-Nearest Neighbour</option>
217 <option value="mean">Mean</option>
218 <option value="median">Median</option>
219 <option value="cubic">Cubic Spline</option> 216 <option value="cubic">Cubic Spline</option>
220 </param> 217 </param>
221 <when value="knn"> 218 <when value="knn">
222 <param name="k" type="integer" min="1" max="100" value="10" label="Type a number of neighbors to use in the KNN imputation method" /> 219 <param name="k" type="integer" min="1" max="100" value="10" label="Type a number of neighbors to use in the KNN imputation method" />
223 <param name="maxp" type="integer" min="1" max="2000" value="1500" label="Type the maximum number of imputed transcripts to use in the KNN method." help="Larger numbers are divided by two-means clustering (recursively) 220 <param name="maxp" type="integer" min="1" max="2000" value="1500" label="Type the maximum number of imputed transcripts to use in the KNN method." help="Larger numbers are divided by two-means clustering (recursively)