Mercurial > repos > davidecangelosi > pipe_t
comparison pipe-t.R @ 24:6ae13912ab03 draft
planemo upload for repository https://github.com/igg-molecular-biology-lab/pipe-t.git commit a642a9310fd2d16488b42aef5e0cde8124e978e3
| author | davidecangelosi |
|---|---|
| date | Wed, 29 May 2019 07:32:50 -0400 |
| parents | 465e643e1ea1 |
| children | f008adc272a2 |
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| 23:465e643e1ea1 | 24:6ae13912ab03 |
|---|---|
| 811 width = 10*300, # 5 x 300 pixels | 811 width = 10*300, # 5 x 300 pixels |
| 812 height = 10*300, | 812 height = 10*300, |
| 813 res = 300, # 300 pixels per inch | 813 res = 300, # 300 pixels per inch |
| 814 pointsize = 8) | 814 pointsize = 8) |
| 815 | 815 |
| 816 plotCtBoxes(normalizedDataset, ylim=c(min(exprs(normalizedDataset), na.rm = TRUE),max(exprs(normalizedDataset),cex.lab=3, cex.axis = 2,stratify=NULL, xlab = "Samples", ylab="DeltaCt", mar = c(8,8,8,8), names=as.character(seq(1, ncol(normalizedDataset), 1))) # smaller font size | 816 plotCtBoxes(normalizedDataset, ylim=c(min(exprs(normalizedDataset), na.rm = TRUE),max(exprs(normalizedDataset), na.rm = TRUE)),cex.lab=3, cex.axis = 2,stratify=NULL, xlab = "Samples", ylab="DeltaCt", mar = c(8,8,8,8), names=as.character(seq(1, ncol(normalizedDataset), 1))) # smaller font size |
| 817 dev.off() | 817 dev.off() |
| 818 | 818 |
| 819 ################################################## Filtering based on number of NAs################################################## | 819 ################################################## Filtering based on number of NAs################################################## |
| 820 | 820 |
| 821 #FILTERING on the basis of NAs | 821 #FILTERING on the basis of NAs |