Mercurial > repos > davidecangelosi > pipe_t
comparison pipe-t.R @ 17:81f51d722102 draft
planemo upload for repository https://github.com/igg-molecular-biology-lab/pipe-t.git commit e398b5c7a84d650a355ab3a7fbff2757f7a1ca78
| author | davidecangelosi |
|---|---|
| date | Fri, 24 May 2019 10:49:05 -0400 |
| parents | 254114751c2e |
| children | 2a6088c11d42 |
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| 16:254114751c2e | 17:81f51d722102 |
|---|---|
| 350 } | 350 } |
| 351 if (missing(column.info)) { | 351 if (missing(column.info)) { |
| 352 column.info <- switch(format, EDS = list(flag="EXPFAIL", feature="Target.Name", position="Well.Position", Ct="CT"), | 352 column.info <- switch(format, EDS = list(flag="EXPFAIL", feature="Target.Name", position="Well.Position", Ct="CT"), |
| 353 plain = list(flag = 4, feature = 6, type = 7, position = 3, Ct = 8), | 353 plain = list(flag = 4, feature = 6, type = 7, position = 3, Ct = 8), |
| 354 #SDS = list(flag = 4,feature = 6, type = 7, position = 3, Ct = 8), | 354 #SDS = list(flag = 4,feature = 6, type = 7, position = 3, Ct = 8), |
| 355 SDS = list(flag = "Omit",feature = "Detector", type = "Task", position = "Pos", Ct = "Avg.Ct"), | 355 SDS = list(flag = "Omit",feature = "Detector", type = "Task", Ct = "Avg.Ct"), |
| 356 LightCycler = list(feature = "Name", | 356 LightCycler = list(feature = "Name", |
| 357 position = "Pos", Ct = "Cp"), CFX = list(feature = "Content", | 357 position = "Pos", Ct = "Cp"), CFX = list(feature = "Content", |
| 358 position = "Well", Ct = "Cq.Mean"), OpenArray = list(flag = "ThroughHole.Outlier", | 358 position = "Well", Ct = "Cq.Mean"), OpenArray = list(flag = "ThroughHole.Outlier", |
| 359 feature = "Assay.Assay.ID", type = "Assay.Assay.Type", | 359 feature = "Assay.Assay.ID", type = "Assay.Assay.Type", |
| 360 position = "ThroughHole.Address", Ct = "ThroughHole.Ct"), | 360 position = "ThroughHole.Address", Ct = "ThroughHole.Ct"), |