diff test-data/Output_Differentially_Expressed_transcripts.txt @ 30:30ab487171ab draft

planemo upload for repository https://github.com/igg-molecular-biology-lab/pipe-t.git commit 488b3c091e8bf80f741a3e46b929427f1658ba3a-dirty
author davidecangelosi
date Thu, 10 Oct 2019 04:24:43 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Output_Differentially_Expressed_transcripts.txt	Thu Oct 10 04:24:43 2019 -0400
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