Mercurial > repos > davidecangelosi > pipe_t
diff docker/Dockerfile @ 1:ecd0a79e8130 draft
planemo upload for repository https://github.com/igg-molecular-biology-lab/pipe-t.git commit 065f5723959c01b6afec74dad189608477e0ac18
| author | davidecangelosi |
|---|---|
| date | Fri, 03 May 2019 11:01:43 -0400 |
| parents | |
| children | 11393eb1c557 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/docker/Dockerfile Fri May 03 11:01:43 2019 -0400 @@ -0,0 +1,36 @@ +# Galaxy - PIPE_T +# +# VERSION 0.2 + +FROM bgruening/galaxy-stable:latest + +MAINTAINER D. CANGELOSI, davidecangelosi@gaslini.org + +ENV GALAXY_CONFIG_BRAND="Galaxy PIPE-T" +ENV ENABLE_TTS_INSTALL True + +RUN apt-get -y update +RUN apt-get install -y libxml2-dev libcurl4-openssl-dev curl libcairo2-dev + +#Workaround for ubuntu +#RUN cp /etc/ssl/private/ssl-cert-snakeoil.key /etc/ +#RUN chown root:ssl-cert /etc/ssl-cert-snakeoil.key +#RUN sed -i -e "s/\/ssl\/private//g" /etc/postgresql/9.3/main/postgresql.conf + +#install pipe_t from toolshed +ADD tools.yml $GALAXY_ROOT/tools.yaml +RUN install-tools $GALAXY_ROOT/tools.yaml && \ + /tool_deps/_conda/bin/conda clean --all --yes + +#RUN chown galaxy:galaxy /usr/local/lib/R/site-library + +# Mark folders as imported from the host. +#VOLUME ["/export/", "/data/", "/var/lib/docker"] + +# Expose port 80 (webserver), 21 (FTP server), 8800 (Proxy) +EXPOSE :80 +EXPOSE :21 +EXPOSE :8800 + +# Autostart script that is invoked during container start +CMD ["/usr/bin/startup"]