Mercurial > repos > davidecangelosi > pipe_t
view test-data/Output_Differentially_Expressed_transcripts.txt @ 31:e4281dad3291 draft default tip
planemo upload for repository https://github.com/igg-molecular-biology-lab/pipe-t.git commit 488b3c091e8bf80f741a3e46b929427f1658ba3a-dirty
| author | davidecangelosi |
|---|---|
| date | Thu, 10 Oct 2019 09:23:42 -0400 |
| parents | 30ab487171ab |
| children |
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RPs.class1...class2 RPs.class1...class2.1 RPrank.class1...class2 RPrank.class1...class2.1 pfp.class1...class2 pfp.class1...class2.1 pval.class1...class2 pval.class1...class2.1 AveFC hsa.let.7a.4373169 35.2287166697874 66.8121056614332 25 92 1.12522901489316 1.10873932246089 0.232485333655611 0.843008410466132 -0.44813283122807 hsa.let.7c.4373167 46.8700792380026 55.6516370615522 63 67 0.926083656696879 1.20053894957392 0.482175788197548 0.66476123654093 0.00830626877193108 hsa.let.7d.4395394 56.1213665897553 57.4739474917145 85 71 0.959014966842299 1.1908604706699 0.673688199847896 0.698769367087296 0.11204156877193 hsa.let.7e.4395517 55.0032952491413 60.0985135384074 81 78 0.974370930993455 1.15509135737272 0.652264838103057 0.744604346074979 0.0400519021052643 hsa.let.7f.4373164 47.0764202431293 44.4036990878072 65 50 0.906012584559215 1.03523375896117 0.486700975176438 0.427782545025278 0.307971257634196 hsa.let.7g.4395393 50.6877532345653 65.4675420878088 71 90 0.962136400315681 1.1099226159017 0.564559375391846 0.825562276290523 -0.141038364561402 hsa.miR.9.4373285 10.536127469722 56.6034590519905 1 70 0.126021897856574 1.18015755445825 0.00104150328807086 0.682735775306423 -1.8888603645614 hsa.miR.10a.4373153 62.8914554100751 28.2998209406868 100 17 0.954623829263224 0.808947655961007 0.788945313440681 0.113653802903613 0.941296102105263 hsa.miR.10b.4395329 65.7105950009909 22.1423988128832 102 12 0.983185275810632 0.443542314376782 0.828800811013921 0.0439876675414991 1.37043604635244 MammU6.4395470 34.9085465989085 70.7696006670046 24 108 1.14064856656784 0.994619381519313 0.226244343782051 0.887759447967651 -0.51441323122807 MammU6.4395470.1 35.291306528833 69.0508562562824 27 101 1.0473770474074 1.04170574588188 0.233712233719008 0.869522977967516 -0.51441323122807 hsa.miR.15a.4373123 42.9557679606758 41.1078034646755 50 42 0.957823451458406 1.02342579765472 0.395794814652234 0.355238706623951 0.437773976591533 hsa.miR.15b.4373122 55.1994921062869 39.6877334577216 83 35 0.956435636268589 1.12183054313454 0.656067419919776 0.324496438096766 0.505775935438597 hsa.miR.16.4373121 46.8093566468396 68.4414125389229 62 98 0.93841945275974 1.06506788535081 0.480843025381024 0.862616964994875 -0.230271264561404 hsa.miR.17.4395419 74.6669180090301 37.586465138777 113 30 0.987882473803613 1.12972009654058 0.92256793008106 0.280095891704277 0.775343502105263 hsa.miR.18a.4395533 75.4064931066633 28.9044399642879 114 20 0.985191937103621 0.740915478994738 0.928197362229858 0.122465368428882 1.0351033354386 hsa.miR.18b.4395328 84.777879778874 17.2768167295538 115 7 1.0276184312077 0.25093199374832 0.976662145362688 0.0145167269110598 2.18943941617554 hsa.miR.19a.4373099 64.5324435433049 44.9034765223427 101 51 0.973695248372392 1.04114907406384 0.812753885005055 0.438831427911205 0.480579502105264 hsa.miR.19b.4373098 67.8331532853782 42.4334749945257 104 44 0.995332421129292 1.05679333618965 0.855492328904515 0.384288485887146 0.572982635438597 hsa.miR.20a.4373286 69.5504329403339 34.8493912454534 107 26 0.989498941483387 1.04757037723744 0.875011460650599 0.225097767009698 0.78123896877193 hsa.miR.20b.4373263 58.693517173634 44.2445061439214 94 49 0.927515425142335 1.04766925755135 0.72054917325107 0.424262757190218 0.614445202105264 hsa.miR.21.4373090 58.3757240329522 40.5391078238433 91 37 0.950651330826961 1.12128152686414 0.714952653762425 0.342871210693993 0.567005868771932 hsa.miR.22.4373079 24.3608555659537 75.0909067867862 7 115 1.11982567689629 0.974136024182765 0.0647833036220993 0.92583175852081 -1.08916753122807 hsa.miR.23a.4373074 55.1847427037704 56.1075911595715 82 68 0.967678585973674 1.19830562655311 0.655782182230093 0.673427955418276 0.0811706354385975 hsa.miR.23b.4373073 35.2492761980368 43.000024716232 26 46 1.08382539749689 1.0436800570152 0.232888101941481 0.396770930766108 0.137116705448388 hsa.miR.24.4373072 44.4478720044645 69.1218871331497 55 102 0.94327028191146 1.03242988771413 0.428759219050664 0.870312797907782 -0.256882597894736 hsa.miR.25.4373071 62.0643646493867 45.5648291729117 98 54 0.958504342621373 1.01604188157759 0.776309302288384 0.453440178555289 0.425048902105264 hsa.miR.26a.4395166 46.5553393478423 68.7075708531158 60 99 0.958446614028142 1.05803075548507 0.475262783815607 0.865661527215058 -0.258735864561402 hsa.miR.26b.4395167 40.4101733209449 75.0066541288493 43 114 0.956960881537346 0.982001016694782 0.340077007488478 0.925191040522356 -0.434572064561403 hsa.miR.27a.4373287 42.7511323033725 70.193670434168 49 106 0.966230786911811 1.00664117623788 0.391283541807262 0.881850947778637 -0.31787353122807 hsa.miR.27b.4373068 46.4106700456541 67.0737830815825 59 93 0.968166792531627 1.10106177082014 0.472081328589802 0.846270617241925 -0.25140753122807 hsa.miR.28.3p.4395557 40.6322352834779 60.535210550394 44 79 0.948452355718037 1.15156360788875 0.34489176571565 0.751847314241415 -0.176673097894737 hsa.miR.28.5p.4373067 41.3162688386693 69.9739445489307 47 104 0.926263442481905 1.02331476972329 0.359788279311153 0.879543273150594 -0.309909764561403 MammU6.4395470.2 34.2413989197904 70.8211622262731 20 109 1.29128456647729 0.986070702225151 0.213435465533437 0.888278566467284 -0.51441323122807 MammU6.4395470.3 35.7320903744624 70.1035015896213 29 105 1.01145197294661 1.0151410642516 0.242414109218608 0.88090753509436 -0.51441323122807 hsa.miR.29a.4395223 46.9495080801353 55.5296052753449 64 66 0.91490821426252 1.21444484960372 0.483918394320672 0.662424463420211 -0.0153592312280697 hsa.miR.29b.4373288 36.2255124931867 61.9400432414879 30 84 1.01752170722232 1.11546664349633 0.252278109228674 0.774373537633814 -0.304025264561403 hsa.miR.29c.4395171 21.4070139513841 87.448327519995 4 120 1.15420154444355 0.992385730901883 0.0381554229568115 0.984184195935752 -1.12739733122807 hsa.miR.30b.4373290 27.6604748752578 73.4795474546169 12 113 1.05576699802616 0.977524390483328 0.104704165093504 0.912894678715835 -0.779788564561403 hsa.miR.30c.4373060 26.4828802385374 71.8840757001403 8 112 1.34969521954483 0.970833509228798 0.0892360475732122 0.898622752344011 -0.928280897894736 hsa.miR.31.4395390 31.0387332562355 33.731422852518 17 25 1.11142028637526 0.986545981005909 0.156149957589912 0.203831814257419 0.0525106354385969 hsa.miR.34a.4395168 36.9159919865016 61.5506233672022 34 83 0.947662366217544 1.11997728134392 0.266285292986748 0.768248878938388 -0.26537363122807 hsa.miR.92a.4395169 70.2375563601087 36.1404209078546 108 29 0.988512088660818 1.04547376034016 0.882308310540234 0.250568091321194 0.889609802105264 hsa.miR.93.4373302 61.2965369611069 39.6311528950135 97 34 0.953284120454412 1.15050372665693 0.764202972595686 0.323282038895337 0.655649168771931 hsa.miR.95.4373011 86.6178299778828 22.8141565572012 117 13 1.01565557183331 0.463271515662733 0.982080181028906 0.0497729727571531 1.51506430210526 hsa.miR.99a.4373008 53.6287604841303 54.5424069087342 78 64 0.969762832864305 1.21616757896779 0.625136371598478 0.643262190528419 0.067893602105263 hsa.miR.99b.4373007 37.5431376334204 67.3674361795056 36 94 0.9384140695571 1.09399431652567 0.279197574413683 0.849879882259614 -0.335970497894736 hsa.miR.100.4373160 41.1959384949464 59.3785745243349 46 76 0.939489234791612 1.16608949180712 0.357161196697637 0.732419846093731 -0.21304413122807 hsa.miR.101.4395364 55.868822913912 48.3345028779069 84 55 0.963537715579973 1.13112154653309 0.668902215774526 0.514146157515043 0.403893962919811 hsa.miR.103.4373158 50.1335088328923 57.7723374576166 70 73 0.955583857214164 1.16719115346879 0.552817107479268 0.704173175233235 0.0393743354385956 hsa.miR.106a.4395280 72.3371349449597 38.8156554860747 110 31 0.993109633254118 1.19393930554071 0.902826939321925 0.305885276626132 0.717189835438597 RNU44.4373384 62.2279471966461 39.3871248316707 99 32 0.951917923211897 1.20264527679008 0.778841937173371 0.31805494923374 0.706346502105264 hsa.miR.106b.4373155 53.4692575420864 49.4429417801746 76 57 0.990186637515657 1.14221159273777 0.62193540868752 0.538066618066551 0.236924635438597 hsa.miR.125a.5p.4395309 37.1288416705334 68.0382007010791 35 97 0.935669642411137 1.07018894256274 0.270648243672643 0.857920061393268 -0.391130631228069 hsa.miR.125b.4373148 43.5189237261866 63.1361581554452 53 87 0.931986851200943 1.10235526127562 0.408225645567355 0.792602543231231 -0.13781103122807 hsa.miR.126.4395339 21.5107325508332 71.5225098405362 5 110 0.94250808633345 0.984698124604956 0.0389466151377459 0.895180113277233 -1.10629339789474 hsa.miR.127.3p.4373147 70.6187612154893 21.4177631503247 109 11 0.983798303419578 0.420606395801794 0.886231529526727 0.0382369450728903 1.65796630210526 hsa.miR.128.4395327 57.4334970855617 50.8322639707996 87 59 0.970827703948121 1.16407309662517 0.698033142508153 0.567605890089961 0.254177884796816 hsa.miR.130a.4373145 39.6898089986034 66.1803482941243 42 91 0.934987175034544 1.11021338788605 0.324541002904552 0.834953870228351 -0.28605290863586 hsa.miR.130b.4373144 58.3212622499881 44.2206673112049 90 48 0.959917080958772 1.06816704156969 0.713987911456938 0.423735685911943 0.426522835438596 hsa.miR.132.4373143 72.5481231622978 30.9971155493347 111 22 0.986251944136728 0.855010096877489 0.904743519001461 0.155456381250453 1.08109146877193 hsa.miR.133a.4395357 26.6176036941829 28.2612800662868 9 16 1.22261041614934 0.855345261752124 0.090937964837554 0.113103505686231 0.0156927687719302 hsa.miR.134.4373299 94.5860290976694 12.0052026909073 120 3 1.00376197015933 0.0888428320079531 0.995466416686941 0.00220271484317239 2.73494884290486 hsa.miR.135b.4395372 90.1424166598191 10.3634623424458 118 2 1.01489401976457 0.0571541642160587 0.98973135811751 0.000944696929191053 3.19000553638624 hsa.miR.138.4395395 30.8719206694688 28.7546756138386 16 19 1.15992449296295 0.765813092343432 0.153378445350472 0.120251642599382 0.413280548641702 hsa.miR.139.5p.4395400 37.6606040820164 58.1010887575846 37 74 0.921022016462453 1.16106210999598 0.281634831480254 0.710071042476881 -0.169963464561402 hsa.miR.140.3p.4395345 23.7176839486084 87.2925639970237 6 119 1.17477999363176 1.00033932862384 0.0582535534032279 0.983804794266422 -1.04643829789474 hsa.miR.140.5p.4373374 20.9145854915436 92.2260079976253 3 121 1.39303335747277 0.992874193573837 0.0345380171274241 0.992874193573837 -1.13894009789474 hsa.miR.142.3p.4373136 53.3973360135554 52.2313391384686 75 60 1.00105496570517 1.20343877292273 0.620488615106509 0.596746498969947 0.115200435438597 hsa.miR.142.5p.4395359 58.785225999407 35.2848877798901 95 27 0.919795779838877 1.04681272394842 0.722153711443746 0.233586310302539 0.781394586221705 hsa.miR.143.4395360 27.2901874207341 54.5170378097775 10 63 1.20633380527445 1.23451468637879 0.0996970087003674 0.642763844974078 -0.525173564561403 hsa.miR.145.4395389 44.2689617730106 41.094552626756 54 41 0.951874441796707 1.04753475517701 0.424803469892745 0.354949793076508 0.177742502105263 hsa.miR.146a.4373132 56.7436362549979 31.3136457717637 86 24 0.964263557759411 0.810531290578024 0.685344346837267 0.160766536974153 0.99484577853081 hsa.miR.146b.5p.4373178 32.1622309627703 58.760620605813 18 75 1.17901838828226 1.16438086950786 0.175391165199014 0.721723679447018 -0.39673643122807 hsa.miR.148a.4373130 49.3285001356973 41.825740618728 68 43 0.953071063677043 1.04380361935722 0.535610184545776 0.370938476300501 0.344109068771931 hsa.miR.149.4395366 43.0230100748501 31.2579792120465 51 23 0.942561411907683 0.840828184600261 0.397277950473486 0.159826845006661 0.499046360426002 hsa.miR.150.4373127 48.4268429585011 35.4839003363998 67 28 0.932150005868317 1.02634472609142 0.516149176803117 0.237501258930246 0.582082435438597 hsa.miR.152.4395170 36.857609624375 64.3442770129302 33 88 0.972004677371022 1.11390084884224 0.265092184737551 0.810109708248899 -0.33951953122807 hsa.miR.181a.4373117 34.5681812444294 75.1705576556829 22 116 1.20821639215874 0.966366415621499 0.219675707665226 0.926433919108214 -0.583370231228069 RNU48.4373383 43.4822845107493 59.7178345106474 52 77 0.948026431331117 1.16002716785328 0.407416317596844 0.738199106815723 -0.162982697894737 hsa.miR.185.4395382 40.9509410503499 67.7516603357923 45 96 0.946006925553427 1.07705139263432 0.351820757437225 0.854520113164419 -0.230903797894736 hsa.miR.186.4395396 57.7291088314302 57.5860294674931 88 72 0.967165757372592 1.17774134365749 0.703393278089158 0.700804766473877 0.129796702105264 hsa.miR.191.4395410 68.3171695401597 49.1051218271018 106 56 0.983045744180738 1.14692064877471 0.861180569282299 0.530806250672594 0.38859766877193 hsa.miR.192.4373108 46.7879392854463 15.3759479001326 61 5 0.952870707632679 0.198505578118786 0.480372836079284 0.00820270983961924 2.2527731354386 hsa.miR.193a.5p.4395392 34.8391250420824 69.6470086466764 23 103 1.18316426610117 1.02915154590778 0.224898992729974 0.876054621723155 -0.437929764561403 hsa.miR.193b.4395478 28.7808038165245 67.4741760646398 13 95 1.12284638537955 1.08413237673169 0.120636388511852 0.851178312310004 -0.655673364561403 hsa.miR.194.4373106 39.2549588278796 15.8799312932915 40 6 0.953574726419197 0.194335779001427 0.315231314518743 0.00963648490916165 2.08315346877193 hsa.miR.195.4373105 29.1465841619012 78.9169345223434 14 117 1.08975561464934 0.983531952517441 0.126087426488354 0.951018499541658 -0.777260397894735 hsa.miR.196b.4395326 37.845617234098 30.8732704681634 39 21 0.885735556895789 0.883880688263613 0.285485014206081 0.153400780607735 0.74712636670527 hsa.miR.197.4373102 45.8409672027188 50.4046068768689 58 58 0.958679742481785 1.16529647183573 0.459532438544988 0.558571862532828 0.0956193354385968 hsa.miR.199a.3p.4395415 61.0542938866474 40.8347131760383 96 39 0.95830652201404 1.08369889789593 0.760309306721883 0.349291380313565 0.592049235438597 hsa.miR.200a.4378069 52.7988697759324 20.2799897286481 73 10 1.00839184975806 0.365542273878026 0.608368636630897 0.0302101052791757 1.50274430210526 hsa.miR.200b.4395362 91.7675290155164 14.2345118100525 119 4 1.0089344542611 0.167171788371197 0.992257851711325 0.00552634011144454 2.50608283622595 hsa.miR.200c.4395411 97.2285057132699 8.76837528719496 121 1 0.997419039387118 0.0411426767284208 0.997419039387118 0.000340022121722486 4.23872162921062 hsa.miR.204.4373094 11.6393438820439 70.5328038998662 2 107 0.11196606858841 1.00119542907081 0.00185067881964314 0.885354635624598 -1.83589803122807 hsa.miR.210.4373089 44.7255719063089 39.5074283496487 57 33 0.923206349303533 1.17564219550969 0.434898858762821 0.320629689684462 0.268055302105264 hsa.miR.214.4395417 54.9809722228099 40.3284130593875 80 36 0.985894458668031 1.13708791238937 0.651831047053243 0.338307147487745 0.592415402105263 hsa.miR.218.4373081 33.3182049462543 61.5005304238664 19 82 1.24932927365745 1.13246309698033 0.196175671070178 0.767454330185019 -0.313370655773772 hsa.miR.221.4373077 37.8420073675619 53.5958822663792 38 61 0.908804762412074 1.23871751815007 0.285409760096354 0.624477426505405 -0.0692033312280695 hsa.miR.222.4395387 35.4493696592197 60.9306968708811 28 80 1.02340243767207 1.14694247914088 0.236820398800149 0.758309077117939 -0.359114564561403 hsa.miR.223.4395406 34.5237596415276 44.0533551340846 21 47 1.260840568503 1.08137089394066 0.21882356974019 0.420036628224884 0.138275235438597 hsa.miR.224.4395210 73.6176445667352 23.1839290539239 112 14 0.987511973966854 0.459335349270241 0.914060670118079 0.0531462387585402 1.39897626877193 hsa.miR.296.5p.4373066 36.8281690924029 55.3455418239781 32 65 1.00010709043955 1.22654222511762 0.264491131355915 0.658886319278058 -0.193292597894736 hsa.miR.301a.4373064 66.0296197448429 24.8634528526249 103 15 0.97856670132758 0.566054900986545 0.832994795344965 0.0701720951636212 1.55340547865687 hsa.miR.320.4395388 58.3846010980728 40.9014415937415 92 40 0.940524776396571 1.06099818777054 0.715109747342847 0.350743202568772 0.393933002105264 hsa.miR.323.3p.4395338 57.959114221853 17.2967717930428 89 8 0.961924459020784 0.220775398867766 0.707531213659915 0.0145967205862986 1.34928400983266 hsa.miR.324.3p.4395272 44.6501754569801 64.3759010153882 56 89 0.936090623370591 1.10199140324386 0.433232024039282 0.810555660237219 -0.174225364561403 hsa.miR.324.5p.4373052 53.120749630527 54.4855204065883 74 62 1.00545287042386 1.25321714216472 0.614905061250956 0.642144320778618 0.0601905354385961 hsa.miR.328.4373049 27.4125003955639 82.4554878253522 11 118 1.11470200844018 0.992769602518229 0.101336546221834 0.968155480141744 -0.838278031228069 hsa.miR.331.3p.4373046 36.6865532858239 71.8468364642764 31 111 1.02110562560939 0.97919716475403 0.261605573503231 0.898271779237168 -0.412132664561403 hsa.miR.335.4373045 67.8664336522007 28.4553495372336 105 18 0.986309216128349 0.779027765866521 0.855888162756005 0.115888427980144 1.0980493144635 hsa.miR.339.3p.4395295 51.1950298390811 61.1540978442817 72 81 0.96669704368085 1.13817347265526 0.575224687148935 0.761917779215507 0.0357133021052634 hsa.miR.339.5p.4395368 41.7139485793845 45.4861361715899 48 53 0.928897518476201 1.03124665973164 0.368488271792212 0.451703082361793 0.00819328176540157 has.miR.155.4395459 58.5745278104554 40.5736249931529 93 38 0.934770932095643 1.0941580777707 0.718460303180949 0.343619892192452 0.503639602105264 hsa.let.7b.4395446 53.6206996952452 56.5600309947179 77 69 0.982103350076228 1.19584050155421 0.624974859139418 0.681925575266451 0.120173802105263 hsa.miR.342.3p.4395371 47.1585003227777 61.9962760390221 66 85 0.895582233510376 1.10359159199459 0.488499400096569 0.775250291897028 -0.0869565312280698 hsa.miR.345.4395297 39.4847738641054 68.725462444004 41 100 0.944816731426246 1.0476961636762 0.320144512301455 0.865864598079504 -0.37189033122807 hsa.miR.361.5p.4373035 54.0431898119479 44.9099409774623 79 52 0.970149106691587 1.02145944950104 0.633403135773846 0.438974308876479 0.336599502105263 hsa.miR.362.5p.4378092 49.3515939061691 42.901185378551 69 45 0.940128163461519 1.06101181657143 0.53610614280037 0.394591171452184 0.348744533765758 hsa.miR.365.4373194 30.5505149724016 62.5808039552251 15 86 1.19469590385703 1.10341990548356 0.148102797998805 0.784248858442861 -0.530506497894736 hsa.miR.370.4395386 85.6135441452575 17.529637034432 116 9 1.02146720058491 0.209097025210238 0.979257812130986 0.0155526712966292 2.0395945354386