annotate PKG-INFO @ 14:778f03497adb

Uploaded
author davidmurphy
date Fri, 24 Feb 2012 11:37:26 -0500
parents c55bdc2fb9fa
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
1 Metadata-Version: 1.0
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
2 Name: weblogo
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
3 Version: 3.0
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
4 Summary: WebLogo3 : Sequence Logos Redrawn
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
5 Home-page: http://code.google.com/p/weblogo/
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
6 Author: Gavin Crooks
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
7 Author-email: gec@threeplusone.com
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
8 License: UNKNOWN
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
9 Download-URL: http://weblogo.googlecode.com/svn/dist/weblogo-3.0.tar.gz
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
10 Description:
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
11 WebLogo (http://code.google.com/p/weblogo/) is a tool for creating sequence
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
12 logos from biological sequence alignments. It can be run on the command line,
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
13 as a standalone webserver, as a CGI webapp, or as a python library.
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
14
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
15 The main WebLogo webserver is located at http://bespoke.lbl.gov/weblogo/
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
16
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
17 Please consult the manual for installation instructions and more information:
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
18 (Also located in the weblogolib/htdocs subdirectory.)
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
19
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
20 http://bespoke.lbl.gov/weblogo/manual.html
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
21
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
22 For help on the command line interface run
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
23 ./weblogo --help
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
24
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
25 To build a simple logo run
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
26 ./weblogo < cap.fa > logo0.eps
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
27
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
28 To run as a standalone webserver at localhost:8080
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
29 ./weblogo --server
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
30
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
31 To create a logo in python code:
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
32 >>> from weblogolib import *
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
33 >>> fin = open('cap.fa')
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
34 >>> seqs = read_seq_data(fin)
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
35 >>> data = LogoData.from_seqs(seqs)
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
36 >>> options = LogoOptions()
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
37 >>> options.title = "A Logo Title"
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
38 >>> format = LogoFormat(data, options)
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
39 >>> fout = open('cap.eps', 'w')
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
40 >>> eps_formatter( data, format, fout)
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
41
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
42
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
43 -- Distribution and Modification --
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
44 This package is distributed under the new BSD Open Source License.
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
45 Please see the LICENSE.txt file for details on copyright and licensing.
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
46 The WebLogo source code can be downloaded from
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
47 http://code.google.com/p/weblogo/
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
48
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
49 WebLogo requires Python 2.3, 2.4 or 2.5, the corebio python toolkit for
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
50 computational biology (http://code.google.com/p/corebio), and the python
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
51 array package 'numpy' (http://www.scipy.org/Download)
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
52
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
53 Platform: UNKNOWN
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
54 Classifier: Development Status :: 5 - Production/Stable
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
55 Classifier: Intended Audience :: Science/Research
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
56 Classifier: License :: OSI Approved :: BSD License
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
57 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
58 Classifier: Programming Language :: Python
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
59 Classifier: Natural Language :: English
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
60 Classifier: Operating System :: OS Independent
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
61 Classifier: Topic :: Software Development :: Libraries
c55bdc2fb9fa Uploaded
davidmurphy
parents:
diff changeset
62 Classifier: Topic :: Software Development :: Libraries :: Python Modules