annotate PKG-INFO @ 0:c55bdc2fb9fa

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author davidmurphy
date Thu, 27 Oct 2011 12:09:09 -0400
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1 Metadata-Version: 1.0
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2 Name: weblogo
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3 Version: 3.0
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4 Summary: WebLogo3 : Sequence Logos Redrawn
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5 Home-page: http://code.google.com/p/weblogo/
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6 Author: Gavin Crooks
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7 Author-email: gec@threeplusone.com
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8 License: UNKNOWN
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9 Download-URL: http://weblogo.googlecode.com/svn/dist/weblogo-3.0.tar.gz
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10 Description:
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11 WebLogo (http://code.google.com/p/weblogo/) is a tool for creating sequence
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12 logos from biological sequence alignments. It can be run on the command line,
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13 as a standalone webserver, as a CGI webapp, or as a python library.
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14
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15 The main WebLogo webserver is located at http://bespoke.lbl.gov/weblogo/
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16
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17 Please consult the manual for installation instructions and more information:
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18 (Also located in the weblogolib/htdocs subdirectory.)
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19
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20 http://bespoke.lbl.gov/weblogo/manual.html
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21
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22 For help on the command line interface run
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23 ./weblogo --help
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24
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25 To build a simple logo run
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26 ./weblogo < cap.fa > logo0.eps
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27
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28 To run as a standalone webserver at localhost:8080
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29 ./weblogo --server
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30
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31 To create a logo in python code:
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32 >>> from weblogolib import *
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33 >>> fin = open('cap.fa')
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34 >>> seqs = read_seq_data(fin)
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35 >>> data = LogoData.from_seqs(seqs)
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36 >>> options = LogoOptions()
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37 >>> options.title = "A Logo Title"
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38 >>> format = LogoFormat(data, options)
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39 >>> fout = open('cap.eps', 'w')
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40 >>> eps_formatter( data, format, fout)
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41
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42
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43 -- Distribution and Modification --
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44 This package is distributed under the new BSD Open Source License.
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45 Please see the LICENSE.txt file for details on copyright and licensing.
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46 The WebLogo source code can be downloaded from
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47 http://code.google.com/p/weblogo/
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48
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49 WebLogo requires Python 2.3, 2.4 or 2.5, the corebio python toolkit for
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50 computational biology (http://code.google.com/p/corebio), and the python
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51 array package 'numpy' (http://www.scipy.org/Download)
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52
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53 Platform: UNKNOWN
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54 Classifier: Development Status :: 5 - Production/Stable
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55 Classifier: Intended Audience :: Science/Research
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56 Classifier: License :: OSI Approved :: BSD License
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57 Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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58 Classifier: Programming Language :: Python
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59 Classifier: Natural Language :: English
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60 Classifier: Operating System :: OS Independent
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61 Classifier: Topic :: Software Development :: Libraries
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62 Classifier: Topic :: Software Development :: Libraries :: Python Modules