comparison corebio/seq_io/null_io.py @ 0:c55bdc2fb9fa

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#!/usr/bin/env python
 
#  Copyright (c) 2005 Gavin E. Crooks <[e-mail]>
#
#  This software is distributed under the MIT Open Source License.
#  <http://www.opensource.org/licenses/mit-license.html>
#
#  Permission is hereby granted, free of charge, to any person obtaining a 
#  copy of this software and associated documentation files (the "Software"),
#  to deal in the Software without restriction, including without limitation
#  the rights to use, copy, modify, merge, publish, distribute, sublicense,
#  and/or sell copies of the Software, and to permit persons to whom the
#  Software is furnished to do so, subject to the following conditions:
#
#  The above copyright notice and this permission notice shall be included
#  in all copies or substantial portions of the Software.
#
#  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 
#  IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 
#  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
#  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 
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#

"""Null sequence IO. Acts like /dev/null. Read returns empty sequences or sequence lists, writes do nothing."""


from corebio.seq import Seq, SeqList

names = ()
extensions = ()

def read(fin, alphabet=None):       
    assert fin is not None    # Do something with arguments to quite pychecker
    if alphabet is not None : pass
    return SeqList([])

def iterseq(fin, alphabet=None) :
    assert fin is not None
    if alphabet is not None : pass
    yield Seq('')
    return

def write(fout, seqs): 
    assert fout is not None
    assert seqs is not None
    return

    
def writeseq(fout, seq):
    assert fout is not None
    assert seq is not None
    return