Mercurial > repos > davidmurphy > codonlogo
comparison examples/Galaxy-Workflow-make6.ga @ 15:981eb8c3a756 default tip
Uploaded
| author | davidmurphy |
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| date | Sat, 31 Mar 2012 16:07:07 -0400 |
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| children |
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| 14:778f03497adb | 15:981eb8c3a756 |
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| 1 { | |
| 2 "a_galaxy_workflow": "true", | |
| 3 "annotation": "Creates 6 codon logos, one for each frame and one for each frame of the reverse complement.", | |
| 4 "format-version": "0.1", | |
| 5 "name": "make6", | |
| 6 "steps": { | |
| 7 "0": { | |
| 8 "annotation": "", | |
| 9 "id": 0, | |
| 10 "input_connections": {}, | |
| 11 "inputs": [ | |
| 12 { | |
| 13 "description": "", | |
| 14 "name": "Input Dataset" | |
| 15 } | |
| 16 ], | |
| 17 "name": "Input dataset", | |
| 18 "outputs": [], | |
| 19 "position": { | |
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| 21 "top": 194.5 | |
| 22 }, | |
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| 25 "tool_state": "{\"name\": \"Input Dataset\"}", | |
| 26 "tool_version": null, | |
| 27 "type": "data_input", | |
| 28 "user_outputs": [] | |
| 29 }, | |
| 30 "1": { | |
| 31 "annotation": "", | |
| 32 "id": 1, | |
| 33 "input_connections": { | |
| 34 "input": { | |
| 35 "id": 0, | |
| 36 "output_name": "output" | |
| 37 } | |
| 38 }, | |
| 39 "inputs": [], | |
| 40 "name": "Codon Logo", | |
| 41 "outputs": [ | |
| 42 { | |
| 43 "name": "output", | |
| 44 "type": "pdf" | |
| 45 } | |
| 46 ], | |
| 47 "position": { | |
| 48 "left": 555.5, | |
| 49 "top": 200 | |
| 50 }, | |
| 51 "post_job_actions": {}, | |
| 52 "tool_errors": null, | |
| 53 "tool_id": "codonlogo", | |
| 54 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"0\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
| 55 "tool_version": "3", | |
| 56 "type": "tool", | |
| 57 "user_outputs": [] | |
| 58 }, | |
| 59 "2": { | |
| 60 "annotation": "", | |
| 61 "id": 2, | |
| 62 "input_connections": { | |
| 63 "input": { | |
| 64 "id": 0, | |
| 65 "output_name": "output" | |
| 66 } | |
| 67 }, | |
| 68 "inputs": [], | |
| 69 "name": "Codon Logo", | |
| 70 "outputs": [ | |
| 71 { | |
| 72 "name": "output", | |
| 73 "type": "pdf" | |
| 74 } | |
| 75 ], | |
| 76 "position": { | |
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| 78 "top": 281 | |
| 79 }, | |
| 80 "post_job_actions": {}, | |
| 81 "tool_errors": null, | |
| 82 "tool_id": "codonlogo", | |
| 83 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"1\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
| 84 "tool_version": "3", | |
| 85 "type": "tool", | |
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| 87 }, | |
| 88 "3": { | |
| 89 "annotation": "", | |
| 90 "id": 3, | |
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| 93 "id": 0, | |
| 94 "output_name": "output" | |
| 95 } | |
| 96 }, | |
| 97 "inputs": [], | |
| 98 "name": "Codon Logo", | |
| 99 "outputs": [ | |
| 100 { | |
| 101 "name": "output", | |
| 102 "type": "pdf" | |
| 103 } | |
| 104 ], | |
| 105 "position": { | |
| 106 "left": 550.5, | |
| 107 "top": 362 | |
| 108 }, | |
| 109 "post_job_actions": {}, | |
| 110 "tool_errors": null, | |
| 111 "tool_id": "codonlogo", | |
| 112 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"2\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
| 113 "tool_version": "3", | |
| 114 "type": "tool", | |
| 115 "user_outputs": [] | |
| 116 }, | |
| 117 "4": { | |
| 118 "annotation": "", | |
| 119 "id": 4, | |
| 120 "input_connections": { | |
| 121 "input": { | |
| 122 "id": 0, | |
| 123 "output_name": "output" | |
| 124 } | |
| 125 }, | |
| 126 "inputs": [], | |
| 127 "name": "Codon Logo", | |
| 128 "outputs": [ | |
| 129 { | |
| 130 "name": "output", | |
| 131 "type": "pdf" | |
| 132 } | |
| 133 ], | |
| 134 "position": { | |
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| 137 }, | |
| 138 "post_job_actions": {}, | |
| 139 "tool_errors": null, | |
| 140 "tool_id": "codonlogo", | |
| 141 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"3\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
| 142 "tool_version": "3", | |
| 143 "type": "tool", | |
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| 146 "5": { | |
| 147 "annotation": "", | |
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| 151 "id": 0, | |
| 152 "output_name": "output" | |
| 153 } | |
| 154 }, | |
| 155 "inputs": [], | |
| 156 "name": "Codon Logo", | |
| 157 "outputs": [ | |
| 158 { | |
| 159 "name": "output", | |
| 160 "type": "pdf" | |
| 161 } | |
| 162 ], | |
| 163 "position": { | |
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| 167 "post_job_actions": {}, | |
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| 169 "tool_id": "codonlogo", | |
| 170 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"4\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
| 171 "tool_version": "3", | |
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| 175 "6": { | |
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| 184 "inputs": [], | |
| 185 "name": "Codon Logo", | |
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| 198 "tool_id": "codonlogo", | |
| 199 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"5\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
| 200 "tool_version": "3", | |
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| 205 } |
