Mercurial > repos > davidmurphy > codonlogo
comparison examples/Galaxy-Workflow-make6.ga @ 15:981eb8c3a756 default tip
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author | davidmurphy |
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date | Sat, 31 Mar 2012 16:07:07 -0400 |
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14:778f03497adb | 15:981eb8c3a756 |
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1 { | |
2 "a_galaxy_workflow": "true", | |
3 "annotation": "Creates 6 codon logos, one for each frame and one for each frame of the reverse complement.", | |
4 "format-version": "0.1", | |
5 "name": "make6", | |
6 "steps": { | |
7 "0": { | |
8 "annotation": "", | |
9 "id": 0, | |
10 "input_connections": {}, | |
11 "inputs": [ | |
12 { | |
13 "description": "", | |
14 "name": "Input Dataset" | |
15 } | |
16 ], | |
17 "name": "Input dataset", | |
18 "outputs": [], | |
19 "position": { | |
20 "left": 148, | |
21 "top": 194.5 | |
22 }, | |
23 "tool_errors": null, | |
24 "tool_id": null, | |
25 "tool_state": "{\"name\": \"Input Dataset\"}", | |
26 "tool_version": null, | |
27 "type": "data_input", | |
28 "user_outputs": [] | |
29 }, | |
30 "1": { | |
31 "annotation": "", | |
32 "id": 1, | |
33 "input_connections": { | |
34 "input": { | |
35 "id": 0, | |
36 "output_name": "output" | |
37 } | |
38 }, | |
39 "inputs": [], | |
40 "name": "Codon Logo", | |
41 "outputs": [ | |
42 { | |
43 "name": "output", | |
44 "type": "pdf" | |
45 } | |
46 ], | |
47 "position": { | |
48 "left": 555.5, | |
49 "top": 200 | |
50 }, | |
51 "post_job_actions": {}, | |
52 "tool_errors": null, | |
53 "tool_id": "codonlogo", | |
54 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"0\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
55 "tool_version": "3", | |
56 "type": "tool", | |
57 "user_outputs": [] | |
58 }, | |
59 "2": { | |
60 "annotation": "", | |
61 "id": 2, | |
62 "input_connections": { | |
63 "input": { | |
64 "id": 0, | |
65 "output_name": "output" | |
66 } | |
67 }, | |
68 "inputs": [], | |
69 "name": "Codon Logo", | |
70 "outputs": [ | |
71 { | |
72 "name": "output", | |
73 "type": "pdf" | |
74 } | |
75 ], | |
76 "position": { | |
77 "left": 555.5, | |
78 "top": 281 | |
79 }, | |
80 "post_job_actions": {}, | |
81 "tool_errors": null, | |
82 "tool_id": "codonlogo", | |
83 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"1\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
84 "tool_version": "3", | |
85 "type": "tool", | |
86 "user_outputs": [] | |
87 }, | |
88 "3": { | |
89 "annotation": "", | |
90 "id": 3, | |
91 "input_connections": { | |
92 "input": { | |
93 "id": 0, | |
94 "output_name": "output" | |
95 } | |
96 }, | |
97 "inputs": [], | |
98 "name": "Codon Logo", | |
99 "outputs": [ | |
100 { | |
101 "name": "output", | |
102 "type": "pdf" | |
103 } | |
104 ], | |
105 "position": { | |
106 "left": 550.5, | |
107 "top": 362 | |
108 }, | |
109 "post_job_actions": {}, | |
110 "tool_errors": null, | |
111 "tool_id": "codonlogo", | |
112 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"2\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
113 "tool_version": "3", | |
114 "type": "tool", | |
115 "user_outputs": [] | |
116 }, | |
117 "4": { | |
118 "annotation": "", | |
119 "id": 4, | |
120 "input_connections": { | |
121 "input": { | |
122 "id": 0, | |
123 "output_name": "output" | |
124 } | |
125 }, | |
126 "inputs": [], | |
127 "name": "Codon Logo", | |
128 "outputs": [ | |
129 { | |
130 "name": "output", | |
131 "type": "pdf" | |
132 } | |
133 ], | |
134 "position": { | |
135 "left": 552.5, | |
136 "top": 452 | |
137 }, | |
138 "post_job_actions": {}, | |
139 "tool_errors": null, | |
140 "tool_id": "codonlogo", | |
141 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"3\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"0 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
142 "tool_version": "3", | |
143 "type": "tool", | |
144 "user_outputs": [] | |
145 }, | |
146 "5": { | |
147 "annotation": "", | |
148 "id": 5, | |
149 "input_connections": { | |
150 "input": { | |
151 "id": 0, | |
152 "output_name": "output" | |
153 } | |
154 }, | |
155 "inputs": [], | |
156 "name": "Codon Logo", | |
157 "outputs": [ | |
158 { | |
159 "name": "output", | |
160 "type": "pdf" | |
161 } | |
162 ], | |
163 "position": { | |
164 "left": 550.5, | |
165 "top": 549 | |
166 }, | |
167 "post_job_actions": {}, | |
168 "tool_errors": null, | |
169 "tool_id": "codonlogo", | |
170 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"4\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"+1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
171 "tool_version": "3", | |
172 "type": "tool", | |
173 "user_outputs": [] | |
174 }, | |
175 "6": { | |
176 "annotation": "", | |
177 "id": 6, | |
178 "input_connections": { | |
179 "input": { | |
180 "id": 0, | |
181 "output_name": "output" | |
182 } | |
183 }, | |
184 "inputs": [], | |
185 "name": "Codon Logo", | |
186 "outputs": [ | |
187 { | |
188 "name": "output", | |
189 "type": "pdf" | |
190 } | |
191 ], | |
192 "position": { | |
193 "left": 548.5, | |
194 "top": 644 | |
195 }, | |
196 "post_job_actions": {}, | |
197 "tool_errors": null, | |
198 "tool_id": "codonlogo", | |
199 "tool_state": "{\"outformat\": \"\\\"png\\\"\", \"frame\": \"\\\"5\\\"\", \"size\": \"\\\"large\\\"\", \"__page__\": 0, \"colours\": \"{\\\"colour\\\": \\\"no\\\", \\\"__current_case__\\\": 0}\", \"strict\": \"\\\"False\\\"\", \"logoname\": \"\\\"-1 Frame Reverse Complement\\\"\", \"ylabel\": \"\\\"\\\"\", \"input\": \"null\", \"stackheight\": \"\\\"100\\\"\", \"scalewidth\": \"\\\"True\\\"\", \"showyaxis\": \"\\\"True\\\"\", \"comp\": \"{\\\"mode\\\": \\\"none\\\", \\\"__current_case__\\\": 2}\", \"showxaxis\": \"\\\"True\\\"\", \"stackwidth\": \"\\\"40.0\\\"\", \"box\": \"\\\"False\\\"\", \"fineprint\": \"\\\"CodonLogo 1.1\\\"\", \"range\": \"{\\\"mode\\\": \\\"complete\\\", \\\"__current_case__\\\": 0}\", \"xlabel\": \"\\\"\\\"\", \"errorbars\": \"\\\"True\\\"\", \"resolution\": \"\\\"96\\\"\", \"stacks\": \"\\\"20\\\"\"}", | |
200 "tool_version": "3", | |
201 "type": "tool", | |
202 "user_outputs": [] | |
203 } | |
204 } | |
205 } |