diff corebio/data/blosum62.mat @ 4:4d47ab2b7bcc

Uploaded
author davidmurphy
date Fri, 13 Jan 2012 07:18:19 -0500
parents c55bdc2fb9fa
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/corebio/data/blosum62.mat	Fri Jan 13 07:18:19 2012 -0500
@@ -0,0 +1,31 @@
+#  Matrix made by matblas from blosum62_3.iij
+#  * column uses minimum score
+#  BLOSUM Clustered Scoring Matrix in 1/3 Bit Units
+#  Blocks Database = /data/blocks_5.0/blocks.dat
+#  Cluster Percentage: >= 62
+#  Entropy =   0.6979, Expected =  -0.5209
+   A  R  N  D  C  Q  E  G  H  I  L  K  M  F  P  S  T  W  Y  V  B  Z  X  *  
+A  6 -2 -2 -3 -1 -1 -1  0 -2 -2 -2 -1 -1 -3 -1  2  0 -4 -3  0 -2 -1 -1 -6 
+R -2  8 -1 -2 -5  1  0 -3  0 -4 -3  3 -2 -4 -3 -1 -2 -4 -3 -4 -2  0 -2 -6 
+N -2 -1  8  2 -4  0  0 -1  1 -5 -5  0 -3 -4 -3  1  0 -6 -3 -4  5  0 -2 -6 
+D -3 -2  2  9 -5  0  2 -2 -2 -5 -5 -1 -5 -5 -2  0 -2 -6 -5 -5  6  1 -2 -6 
+C -1 -5 -4 -5 13 -4 -5 -4 -4 -2 -2 -5 -2 -4 -4 -1 -1 -3 -4 -1 -5 -5 -3 -6 
+Q -1  1  0  0 -4  8  3 -3  1 -4 -3  2 -1 -5 -2  0 -1 -3 -2 -3  0  5 -1 -6 
+E -1  0  0  2 -5  3  7 -3  0 -5 -4  1 -3 -5 -2  0 -1 -4 -3 -4  1  6 -1 -6 
+G  0 -3 -1 -2 -4 -3 -3  8 -3 -6 -5 -2 -4 -5 -3  0 -2 -4 -5 -5 -1 -3 -2 -6 
+H -2  0  1 -2 -4  1  0 -3 11 -5 -4 -1 -2 -2 -3 -1 -3 -4  3 -5 -1  0 -2 -6 
+I -2 -4 -5 -5 -2 -4 -5 -6 -5  6  2 -4  2  0 -4 -4 -1 -4 -2  4 -5 -5 -2 -6 
+L -2 -3 -5 -5 -2 -3 -4 -5 -4  2  6 -4  3  1 -4 -4 -2 -2 -2  1 -5 -4 -2 -6 
+K -1  3  0 -1 -5  2  1 -2 -1 -4 -4  7 -2 -5 -2  0 -1 -4 -3 -3 -1  1 -1 -6 
+M -1 -2 -3 -5 -2 -1 -3 -4 -2  2  3 -2  8  0 -4 -2 -1 -2 -1  1 -4 -2 -1 -6 
+F -3 -4 -4 -5 -4 -5 -5 -5 -2  0  1 -5  0  9 -5 -4 -3  1  4 -1 -5 -5 -2 -6 
+P -1 -3 -3 -2 -4 -2 -2 -3 -3 -4 -4 -2 -4 -5 11 -1 -2 -5 -4 -4 -3 -2 -2 -6 
+S  2 -1  1  0 -1  0  0  0 -1 -4 -4  0 -2 -4 -1  6  2 -4 -3 -2  0  0 -1 -6 
+T  0 -2  0 -2 -1 -1 -1 -2 -3 -1 -2 -1 -1 -3 -2  2  7 -4 -2  0 -1 -1 -1 -6 
+W -4 -4 -6 -6 -3 -3 -4 -4 -4 -4 -2 -4 -2  1 -5 -4 -4 16  3 -4 -6 -4 -3 -6 
+Y -3 -3 -3 -5 -4 -2 -3 -5  3 -2 -2 -3 -1  4 -4 -3 -2  3 10 -2 -4 -3 -2 -6 
+V  0 -4 -4 -5 -1 -3 -4 -5 -5  4  1 -3  1 -1 -4 -2  0 -4 -2  6 -5 -4 -1 -6 
+B -2 -2  5  6 -5  0  1 -1 -1 -5 -5 -1 -4 -5 -3  0 -1 -6 -4 -5  5  0 -2 -6 
+Z -1  0  0  1 -5  5  6 -3  0 -5 -4  1 -2 -5 -2  0 -1 -4 -3 -4  0  5 -1 -6 
+X -1 -2 -2 -2 -3 -1 -1 -2 -2 -2 -2 -1 -1 -2 -2 -1 -1 -3 -2 -1 -2 -1 -2 -6 
+* -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6 -6  1