diff LICENSE.txt @ 7:8d676bbd1f2d

Uploaded

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+++ b/LICENSE.txt	Mon Jan 16 07:03:36 2012 -0500
@@ -0,0 +1,136 @@
+===============================================================================
+
+		CoreBio Weblogo and Codonlogo : Copyrights and Licenses
+
+===============================================================================
+
+This package is distributed under the new BSD Open Source License. Much 
+of the code was written by Gavin E. Crooks, Gary Hon, Steven Brenner, John-Marc
+Chandonia, Liana Lareau, David Ding, Clare Gollnick,David Murphy and other contributers.
+
+
+
+Copyright Notice 
+================
+Copyright (c) 2006, The Regents of the University of California, through
+Lawrence Berkeley National Laboratory (subject to receipt of any required 
+approvals from the U.S. Dept. of Energy).  All rights reserved.
+
+Parts of this software package are covered by the individual copyrights of the
+contributers. Please refer to individual source code files for further details.
+
+NOTICE.  This software was developed under funding from the U.S. Department of 
+Energy.  As such, the U.S. Government has been granted for itself and others 
+acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide license in 
+the Software to reproduce, prepare derivative works, and perform publicly and 
+display publicly.  Beginning five (5) years after the date permission to assert 
+copyright is obtained from the U.S. Department of Energy, and subject to any 
+subsequent five (5) year renewals, the U.S. Government is granted for itself 
+and others acting on its behalf a paid-up, nonexclusive, irrevocable, worldwide 
+license in the Software to reproduce, prepare derivative works, distribute 
+copies to the public, perform publicly and display publicly, and to permit 
+others to do so.
+
+
+The new BSD Open Source License 
+===============================
+
+#  Copyright (c) 2006, The Regents of the University of California, through 
+#  Lawrence Berkeley National Laboratory (subject to receipt of any required
+#  approvals from the U.S. Dept. of Energy).  All rights reserved.
+
+#  This software is distributed under the new BSD Open Source License.
+#  <http://www.opensource.org/licenses/bsd-license.html>
+#
+#  Redistribution and use in source and binary forms, with or without 
+#  modification, are permitted provided that the following conditions are met: 
+#
+#  (1) Redistributions of source code must retain the above copyright notice, 
+#  this list of conditions and the following disclaimer. 
+#
+#  (2) Redistributions in binary form must reproduce the above copyright 
+#  notice, this list of conditions and the following disclaimer in the 
+#  documentation and or other materials provided with the distribution. 
+#
+#  (3) Neither the name of the University of California, Lawrence Berkeley 
+#  National Laboratory, U.S. Dept. of Energy nor the names of its contributors 
+#  may be used to endorse or promote products derived from this software 
+#  without specific prior written permission. 
+#
+#  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
+#  AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE 
+#  IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE 
+#  ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE 
+#  LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR 
+#  CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 
+#  SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS 
+#  INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN 
+#  CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) 
+#  ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE 
+#  POSSIBILITY OF SUCH DAMAGE. 
+
+
+
+The MIT Open Source License 
+===========================
+
+Parts of the code are covered by the MIT license, which is equivalent to the
+BSD license apart from the third, no promotion clause. Please refer to
+individual source code files for further details.
+
+#  Copyright (c) 2003-2004 The Regents of the University of California.
+#  Copyright (c) 2005 Gavin E. Crooks
+#  Copyright (c) 2006 David Ding
+#  Copyright (c) 2006 Clare Gollnick
+#  Copyright (c) 2002-2005 ActiveState Corp.
+
+#  This software is distributed under the MIT Open Source License.
+#  <http://www.opensource.org/licenses/mit-license.html>
+#
+#  Permission is hereby granted, free of charge, to any person obtaining a 
+#  copy of this software and associated documentation files (the "Software"),
+#  to deal in the Software without restriction, including without limitation
+#  the rights to use, copy, modify, merge, publish, distribute, sublicense,
+#  and/or sell copies of the Software, and to permit persons to whom the
+#  Software is furnished to do so, subject to the following conditions:
+#
+#  The above copyright notice and this permission notice shall be included
+#  in all copies or substantial portions of the Software.
+#
+#  THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR 
+#  IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, 
+#  FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+#  AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER 
+#  LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
+#  FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS 
+#  IN THE SOFTWARE.
+
+
+
+The Biopython License (biopython.org)
+=====================================
+Parts of the code are covered by the biopython license, which is functionally
+equivalent to the BSD license.
+
+   
+#                Biopython License Agreement
+# 
+# Permission to use, copy, modify, and distribute this software and its
+# documentation with or without modifications and for any purpose and
+# without fee is hereby granted, provided that any copyright notices
+# appear in all copies and that both those copyright notices and this
+# permission notice appear in supporting documentation, and that the
+# names of the contributors or copyright holders not be used in
+# advertising or publicity pertaining to distribution of the software
+# without specific prior permission.
+
+# THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
+# WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
+# WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
+# CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
+# OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
+# OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
+# OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
+# OR PERFORMANCE OF THIS SOFTWARE.
+   
+