diff setup.py @ 0:c55bdc2fb9fa

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/setup.py	Thu Oct 27 12:09:09 2011 -0400
@@ -0,0 +1,93 @@
+#!/usr/bin/env python
+
+import sys
+
+from distutils.core import setup
+from distutils.core import Extension
+from distutils.command.build import build
+from distutils.command.install_data import install_data
+
+# Supress warning that distutils generates for the install_requires option
+import warnings
+warnings.simplefilter('ignore', UserWarning, lineno =236)
+
+# check dependancies
+if not hasattr(sys, 'version_info') or sys.version_info < (2,3,0,'final'):
+    raise SystemExit,  \
+        "Dependancy error: CodonLogo requires Python 2.3 or later."
+ 
+ 
+from weblogolib import __version__
+
+def main() :     
+    long_description = open("README.txt").read()
+
+      
+    setup(
+        name             =  "codonlogo",
+        version          =  __version__,
+        description      = "CodonLogo: WebLogo3 messed around with",
+        long_description  = long_description,
+        maintainer       = "David Murphy",
+        maintainer_email = "[e-mail]",
+        classifiers      =[
+            'Development Status :: Alpha',
+            'Intended Audience :: Science/Research',
+            'License :: OSI Approved :: BSD License',
+            'Topic :: Scientific/Engineering :: Bio-Informatics',
+            'Programming Language :: Python',
+            'Natural Language :: English',
+            'Operating System :: OS Independent',
+            'Topic :: Software Development :: Libraries',
+            'Topic :: Software Development :: Libraries :: Python Modules',
+            ],
+        
+        scripts = [ 'codonlogo', ],
+        packages  = [ 'weblogolib',],
+        data_files = ['weblogolib/htdocs/*.*','weblogolib/template.eps'],
+        install_requires=['numpy', 'corebio'],        
+        
+        cmdclass= {"install_data" : _install_data},
+    )
+
+
+# Python 2.3 compatability 
+# Rework the install_data command to act like the package_data distutils
+# command included with python 2.4.
+# Adapted from biopython, which was adapted from mxtexttools
+class _install_data(install_data):
+    def finalize_options(self):
+        if self.install_dir is None:
+            installobj = self.distribution.get_command_obj('install')
+            # Use install_lib rather than install_platlib because we are
+            # currently a pure python distribution (No c extensions.)
+            self.install_dir = installobj.install_lib 
+            #print installobj.install_lib 
+        install_data.finalize_options(self)
+
+    def run (self):
+        import glob
+        import os
+        if not self.dry_run:
+            self.mkpath(self.install_dir)
+        data_files = self.get_inputs()
+        for entry in data_files:
+            if type(entry) is not type(""):
+                raise ValueError("data_files must be strings")
+            # Unix- to platform-convention conversion
+            entry = os.sep.join(entry.split("/"))
+            filenames = glob.glob(entry)
+            for filename in filenames:
+                dst = os.path.join(self.install_dir, filename)
+                dstdir = os.path.split(dst)[0]
+                if not self.dry_run:
+                    self.mkpath(dstdir)
+                    outfile = self.copy_file(filename, dst)[0]
+                else:
+                    outfile = dst
+                self.outfiles.append(outfile)
+  
+if __name__ == '__main__' :
+    main()
+    
+ 
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