Mercurial > repos > davidmurphy > codonlogo
view inter.py @ 8:5149eb3a89c2
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author | davidmurphy |
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date | Fri, 20 Jan 2012 09:03:40 -0500 |
parents | c55bdc2fb9fa |
children |
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#!/usr/tmp/bin/python2.7 import weblogolib from corebio.utils.deoptparse import DeOptionParser import sys #setup def blackboxcodonl(inputf,outputf): parser = weblogolib._build_option_parser() (opts, args) = parser.parse_args(['--size', 'large', '--composition', 'none', '--fin',inputf,'--fout', outputf]) if args : parser.error("Unparsable arguments: %s " % args) #best not to change anything in the try except block. try: data = weblogolib._build_logodata(opts) format = weblogolib._build_logoformat(data, opts) formatter = opts.formatter formatter(data, format, opts.fout) except ValueError, err : print >>sys.stderr, 'Error:', err sys.exit(2) except KeyboardInterrupt, err: sys.exit(0) blackboxcodonl('/home/david/examples/cluster17.aln',"outfile.eps")