Mercurial > repos > davidmurphy > codonlogo
view weblogolib/htdocs/create_html_template.html @ 7:8d676bbd1f2d
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author | davidmurphy |
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date | Mon, 16 Jan 2012 07:03:36 -0500 |
parents | c55bdc2fb9fa |
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/transitional.dtd"> <html> <head> <link rel="stylesheet" type="text/css" href="logo.css" > <title>CodonLogo 1.0- Create </title> <meta name="author" content="Gavin E. Crooks" > <style type="text/css"> td { border-left : white solid 4pt } .error { color: #900; border-left: red solid +4pt; } .err_msg { color: #900; } </style> </head> <body style="align:center"> <form method="post" action="create.cgi" enctype="multipart/form-data" > <table width="80%" border = '0' cellspacing='0' cellpadding='1' align="center"> <tr><td > <h1> Codonlogo 1.0 : Create</h1> </td><td align = "right"> · <a href="./">about</a> · <a class="selected" href="create.cgi">create</a> · <a href="examples.html">examples</a> · <a href="manual.html">manual</a> · <br> <span style="font-size:small">$version</span> </td></tr> <tr><td > Sequence data </td><td > <input type="file" name="sequences_file" > </td></tr> <tr><td > </td><td> <span style="font-size:small ">(or paste sequence data below)</span> </td></tr> <tr><td colspan='2' ${sequences_err} > <textarea name="sequences" rows="12" cols ="100" style="width:100%">${sequences}</textarea> </td></tr> <tr><td> </td><td align="right"> <input style="font-size:large" type="submit" name="cmd_create" value=" Create Logo " > <br> <span style="font-size:small"><input type="checkbox" name="download" value="false" >Download</span> </td></tr> <!-- Reset defaults must come after create_logo so that hitting enter creates a logo--> <!-- <tr><td> <input type="submit" name="cmd_reset" value="Reset defaults" > </td><td class="err_msg" rowspan="2"> ${error_message} </td></tr> <tr><td> </td></tr> --> <tr><td colspan='2' style="height:30pt;border-left-width:90pt;" class="err_msg"> ${error_message} </td></tr> <tr><td ${format_err} > Output format </td><td> <select name="format"> <option ${png} value="png">PNG (low res.)</option> <option ${png_print} value="png_print">PNG (high res.)</option> <option ${jpeg} value="jpeg">JPEG (low res.)</option> <option ${eps} value="eps">EPS (vector)</option> <option ${pdf} value="pdf">PDF (vector)</option> <option ${txt} value="txt">Data (plain text)</option> </select> </td></tr> <tr><td ${size_err} > Logo size </td><td > <select name="size" > <option ${small} >small</option> <option ${medium}>medium</option> <option ${large} >large</option> </select> </td></tr> <tr><td ${stacks_per_line_err}> Stacks per line </td><td> <input type="text" name="stacks_per_line" value="${stacks_per_line}" size="4" maxlength="4" > </td></tr> <tr><td ${alphabet_err}> Sequence type </td><td> <select name="alphabet"> <option ${alphabet_auto} value="alphabet_auto" >auto</option> <option ${alphabet_protein} value="alphabet_protein">protein</option> <option ${alphabet_dna} value="alphabet_dna">dna</option> <option ${alphabet_rna} value="alphabet_rna">rna</option> </select> </td></tr> <tr><td> Ignore lower case </td><td> <input type="checkbox" name="ignore_lower_case" value="true" ${ignore_lower_case} > </td></tr> <tr><td> Use codons: </td><td> <input type="checkbox" name="altype" value="true" ${altype} > </td></tr> <tr><td> Units </td><td> <select name="unit_name" > <option ${probability} >probability</option> <option ${bits} >bits</option> <option ${nats} >nats</option> <option ${kT} >kT</option> <option ${kJ_mol} >kJ/mol</option> <option ${kcal_mol} >kcal/mol</option> </select> </td></tr> <tr><td ${first_index_err}> First position number </td><td> <input type="text" name="first_index" value="${first_index}" size="4" maxlength="80" > </td></tr> <tr><td ${logo_range_err} > Logo range </td><td> <input type="text" name="logo_start" value="${logo_start}" size="4" maxlength="80" > - <input type="text" name="logo_end" value="${logo_end}" size="4" maxlength="80" > </td></tr> <tr><td ${composition_err}> Composition </td><td> <select name="composition" > <option ${comp_none} value = "comp_none" >No adjustment for composition</option> <option ${comp_auto} value = "comp_auto" >auto</option> <option ${comp_equiprobable} value = "comp_equiprobable" >equiprobable</option> <option ${comp_CG} value="comp_CG" >Percentage CG ⇒</option> <option ${comp_Celegans} value="comp_Celegans" >C. elegans (36%) </option> <option ${comp_Dmelanogaster} value="comp_Dmelanogaster" >D. melanogaster (43%)</option> <option ${comp_Ecoli} value="comp_Ecoli" >E. coli (50.5%) </option> <option ${comp_Hsapiens} value="comp_Hsapiens" >H. sapiens (40%) </option> <option ${comp_Mmusculus} value="comp_Mmusculus" >M. musculus (42%)</option> <option ${comp_Scerevisiae} value="comp_Scerevisiae" >S. cerevisiae (38%) </option> </select> or <input type="text" name="percentCG" value="${percentCG}" size="4" maxlength="8" > % CG </td></tr> <tr><td> Scale stack widths </td><td> <input type="checkbox" name="scale_width" value="true" ${scale_width} > </td></tr> <tr><td> Error bars </td><td> <input type="checkbox" name="show_errorbars" value="true" ${show_errorbars} > </td></tr> <tr ><td ${logo_title_err}> Title </td><td > <input type="text" name="logo_title" size="52" maxlength="80" value="${logo_title}" > </td></tr> <tr><td> Figure label</td><td> <input type="text" name="logo_label" value="${logo_label}" size="4" maxlength="100" > </td></tr> <tr><td> X-axis </td><td> <input type="checkbox" name="show_xaxis" value="true" ${show_xaxis} > Label: <input type="text" name="xaxis_label" value="${xaxis_label}" size="20" maxlength="100" > </td></tr> <tr><td> Y-axis </td><td> <input type="checkbox" name="show_yaxis" value="true" ${show_yaxis} > Label: <input type="text" name="yaxis_label" value="${yaxis_label}" size="20" maxlength="32" > </td></tr> <tr><td ${yaxis_scale_err} > Y-axis scale: </td><td> <input type="text" name="yaxis_scale" value="${yaxis_scale}" size="4" maxlength="100" > </td></tr> <tr><td ${yaxis_tic_interval_err} > Y-axis tic spacing: </td><td> <input type="text" name="yaxis_tic_interval" value="${yaxis_tic_interval}" size="4" maxlength="100" > </td></tr> <tr><td> Sequence end labels </td><td> <input type="checkbox" name="show_ends" value="true" ${show_ends} > </td></tr> <tr><td> Version fineprint </td><td> <input type="checkbox" name="show_fineprint" value="true" ${show_fineprint} > </td></tr> <tr><td ${color_scheme_err}>Color scheme </td><td> <select name="color_scheme" > <option ${color_auto} value="color_auto">Auto</option> <option ${color_monochrome} value="color_monochrome" >Monochrome</option> <option ${color_base_pairing} value="color_base_pairing">Base pairing (NA default)</option> <option ${color_classic} value="color_classic">Classic (NA)</option> <option ${color_hydrophobicity} value="color_hydrophobicity">Hydrophobicity (AA default)</option> <option ${color_chemistry} value="color_chemistry">Chemistry (AA)</option> <option ${color_charge} value="color_charge">Charge (AA)</option> <option ${color_custom} value="color_custom">Custom (Specify below)</option> </select> <!-- Color key: <input type="checkbox" name="show_color_key" value="true" ${show_color_key} disabled > --> </td></tr> <tr><td></td><td> <table cellpadding="0" cellspacing="0" style="font-size:small"> <tr> <td>Symbols</td><td>Color</td> <!--<td>Description</td>--> </tr> <tr > <td ${color0_err}><input name="symbols0" type="text" size="16" maxlength="64" value="${symbols0}"></td> <td><input name="color0" type="text" size="16" maxlength="64" value="${color0}"></td> <!--<td><input name="desc0" size="16" maxlength="64" value="${desc0}"></td> --> </tr> <tr > <td ${color1_err}><input name="symbols1" type="text" size="16" maxlength="64" value="${symbols1}"></td> <td><input name="color1" type="text" size="16" maxlength="64" value="${color1}"></td> <!--<td><input name="desc1" size="16" maxlength="64" value="${desc1}"></td>--> </tr> <tr> <td ${color2_err}><input name="symbols2" type="text" size="16" maxlength="64" value="${symbols2}"></td> <td><input name="color2" type="text" size="16" maxlength="64" value="${color2}"></td> <!--<td><input name="desc2" size="16" maxlength="64" value="${desc2}"></td>--> </tr> <tr> <td ${color3_err}><input name="symbols3" type="text" size="16" maxlength="64" value="${symbols3}"></td> <td><input name="color3" type="text" size="16" maxlength="64" value="${color3}"></td> <!--<td><input name="desc3" size="16" maxlength="64" value="${desc3}"></td>--> </tr> <tr> <td ${color4_err}><input name="symbols4" type="text" size="16" maxlength="64" value="${symbols4}"></td> <td><input name="color4" type="text" size="16" maxlength="64" value="${color4}"></td> <!--<td><input name="desc4" size="16" maxlength="64" value="${desc4}"></td>--> </tr> </table> </td></tr> <tr><td> </td><td> </td></tr> <tr><td> <input type="submit" name="cmd_reset" value="Reset defaults" > </td><td align="right"> <input style="font-size:large" type="submit" name="cmd_create" value=" Create Logo " > </td></tr> </table> </form> <script type="text/javascript"> var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www."); document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E")); </script> <script type="text/javascript"> var pageTracker = _gat._getTracker("UA-5951066-1"); pageTracker._trackPageview(); </script> </body> </html>