Mercurial > repos > davidmurphy > codonlogo


CodonLogo (http://recode.ucc.ie/CodonLogo) is a tool for creating sequence
logos from biological sequence alignments.  It can be run on the command line,
as a standalone webserver or as a CGI webapp.


For help on the command line interface run
    ./codonlogo --help

To build a simple logo run
    ./codonlogo  < cap.fa > logo0.eps

To run as a standalone webserver at localhost:8080
    ./codonlogo --server


-- Distribution and Modification --
This package is distributed under the new BSD Open Source License.
Please see the LICENSE.txt file for details on copyright and licensing.
The CodonLogo source code can be downloaded from
http://recode.ucc.ie/CodonLogo

CodonLogo requires Python 2.6 or 2.7, the corebio python toolkit for
computational biology (http://code.google.com/p/corebio), and the python
array package 'numpy' (http://www.scipy.org/Download)
author	davidmurphy
date	Thu, 27 Oct 2011 12:09:09 -0400
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