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1 # RGB color definition. Colors are refered to within configuration files
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2 # by their name. In order to use a color, you must define it here.
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3 #
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4 # e.g. if you really must use 'bisque', then add
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5 #
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6 # bisque = 255,228,196
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7 #
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8 # Many useful colors are already defined. In general, given a HUE, these
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9 # colors are defined
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10 #
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11 # vlHUE (very light HUE, e.g. vlred)
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12 # lHUE (light HUE, e.g. red)
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13 # HUE (e.g. red)
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14 # dHUE (dark HUE, e.g. dred)
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15 #
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16 # In addition to hues, two other color groups are defined.
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17 #
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18 # - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which
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19 # correspond to colors on ideogram bands
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20 # - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA)
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21
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22 optblue = 55,133,221
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23 optgreen = 55,221,125
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24 optyellow = 221,215,55
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25 optorange = 221,164,55
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26 optred = 221,55,55
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27 optviolet = 145,55,221
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28 optpurple = 219,55,221
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29
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30 white = 255,255,255
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31 vvvvlgrey = 250,250,250
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32 vvvlgrey = 240,240,240
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33 vvlgrey = 230,230,230
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34 vlgrey = 220,220,220
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35 lgrey = 210,210,210
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36 grey = 200,200,200
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37 dgrey = 170,170,170
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38 vdgrey = 140,140,140
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39 vvdgrey = 100,100,100
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40 vvvdgrey = 70,70,70
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41 vvvvdgrey = 40,40,40
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42 black = 0,0,0
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43
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44 vlred = 255,193,200
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45 lred = 255,122,137
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46 red = 247,42,66
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47 dred = 205,51,69
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48
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49 vlgreen = 204,255,218
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50 lgreen = 128,255,164
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51 green = 51,204,94
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52 dgreen = 38,153,71
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53
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54 vlblue = 128,176,255
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55 lblue = 64,137,255
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56 blue = 54,116,217
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57 dblue = 38,82,153
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58
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59 vlpurple= 242,128,255
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60 lpurple = 236,64,255
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61 purple = 189,51,204
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62 dpurple = 118,32,128
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63
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64 vlyellow = 255,253,202
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65 lyellow = 255,252,150
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66 yellow = 255,255,0
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67 dyellow = 191,186,48
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68
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69 lime = 186,255,0
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70
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71 vlorange = 255,228,193
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72 lorange = 255,187,110
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73 orange = 255,136,0
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74 dorange = 221,143,55
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75
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76 # karyotype colors
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77
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78 gpos100 = 0,0,0
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79 gpos = 0,0,0
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80 gpos75 = 130,130,130
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81 gpos66 = 160,160,160
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82 gpos50 = 200,200,200
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83 gpos33 = 210,210,210
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84 gpos25 = 200,200,200
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85 gvar = 220,220,220
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86 gneg = 255,255,255
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87 acen = 217,47,39
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88 stalk = 100,127,164
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89
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90 # others
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91
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92 select = 135,177,255
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93
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94 # new york times cmyk-safe
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95
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96 # roygbiv - normal
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97 nyt_blue = 104,152,178
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98 nyt_green = 137,129,96
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99 nyt_yellow = 241,221,117
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100 nyt_orange = 230,146,57
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101 nyt_red = 217,47,39
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102
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103 # chromosome color map (UCSC)
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104
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105 chr1 = 153,102,0
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106 chr2 = 102,102,0
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107 chr3 = 153,153,30
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108 chr4 = 204,0,0
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109 chr5 = 255,0,0
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110 chr6 = 255,0,204
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111 chr7 = 255,204,204
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112 chr8 = 255,153,0
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113 chr9 = 255,204,0
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114 chr10 = 255,255,0
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115 chr11 = 204,255,0
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116 chr12 = 0,255,0
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117 chr13 = 53,128,0
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118 chr14 = 0,0,204
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119 chr15 = 102,153,255
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120 chr16 = 153,204,255
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121 chr17 = 0,255,255
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122 chr18 = 204,255,255
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123 chr19 = 153,0,204
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124 chr20 = 204,51,255
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125 chr21 = 204,153,255
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126 chr22 = 102,102,102
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127 chr23 = 153,153,153
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128 chrX = 153,153,153
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129 chr24 = 204,204,204
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130 chrY = 204,204,204
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131 chrM = 204,204,153
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132 chr0 = 204,204,153
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133 chrUn = 121,204,61
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134 chrNA = 255,255,255
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135
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136
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137
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138
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139
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140
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141
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142
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