Mercurial > repos > davidvanzessen > argalaxy_tools
annotate report_clonality/naive_circos.htm @ 54:81b3eb11ed2c draft
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
| author | rhpvorderman | 
|---|---|
| date | Tue, 16 Nov 2021 15:42:32 +0000 | 
| parents | 124b7fd92a3e | 
| children | 4c6df851e262 | 
| rev | line source | 
|---|---|
| 
54
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
1 <html> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
2 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
3 <head> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
4 <meta http-equiv=Content-Type content="text/html; charset=windows-1252"> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
5 <meta name=Generator content="Microsoft Word 14 (filtered)"> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
6 <style> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
7 <!-- | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
8 /* Font Definitions */ | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
9 @font-face | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
10 {font-family:Calibri; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
11 panose-1:2 15 5 2 2 2 4 3 2 4;} | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
12 /* Style Definitions */ | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
13 p.MsoNormal, li.MsoNormal, div.MsoNormal | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
14 {margin-top:0in; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
15 margin-right:0in; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
16 margin-bottom:10.0pt; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
17 margin-left:0in; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
18 line-height:115%; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
19 font-size:11.0pt; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
20 font-family:"Calibri","sans-serif";} | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
21 p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
22 {margin:0in; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
23 margin-bottom:.0001pt; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
24 font-size:11.0pt; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
25 font-family:"Calibri","sans-serif";} | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
26 .MsoChpDefault | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
27 {font-family:"Calibri","sans-serif";} | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
28 .MsoPapDefault | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
29 {margin-bottom:10.0pt; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
30 line-height:115%;} | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
31 @page WordSection1 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
32 {size:8.5in 11.0in; | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
33 margin:1.0in 1.0in 1.0in 1.0in;} | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
34 div.WordSection1 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
35 {page:WordSection1;} | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
36 --> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
37 </style> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
38 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
39 </head> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
40 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
41 <body lang=EN-US> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
42 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
43 <div class=WordSection1> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
44 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
45 <p class=MsoNormal><span style='font-size:12.0pt;line-height:115%;font-family: | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
46 "Times New Roman","serif"'>Martin Krzywinski, Jacqueline Schein, İnanç | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
47 Birol, Joseph Connors, Randy Gascoyne, Doug Horsman, Steven J. Jones and Marco | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
48 A. Marra (2009). Circos: An information aesthetic for comparative genomics. In <i>Genome | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
49 Research 10.1101/gr.092759.109</i>.</span></p> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
50 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
51 <p class=MsoNormal><span style='font-size:12.0pt;line-height:115%;font-family: | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
52 "Times New Roman","serif"'>Circos plot showing the V-D, V-J, and D-J gen usage. | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
53 The thicker the line the more frequent this gene combination is used.</span></p> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
54 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
55 </div> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
56 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
57 </body> | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
58 | 
| 
 
81b3eb11ed2c
"planemo upload commit 6c0195cc4de6a34e2c46d875be4fc2157a21cdf6"
 
rhpvorderman 
parents: 
52 
diff
changeset
 | 
59 </html> | 
