annotate report_clonality/naive_clonality.htm @ 47:9ba44c15cad1 draft

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author davidvanzessen
date Tue, 18 Jun 2019 05:28:11 -0400
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31 @page WordSection1
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39 </head>
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41 <body lang=EN-US>
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43 <div class=WordSection1>
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44
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45 <p class=MsoNoSpacingCxSpFirst style='text-align:justify'><span
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46 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each donor a
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47 subtab is provided containing information on the sequence overlap between
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48 replicates of the different replicates of one donor. Dependent on the settings
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49 of the Shared clonal types / clonality filter a clonality score is given.  The clonality
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50 score  is calculated according to the formula described by </span><a
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51 name="OLE_LINK13"></a><a name="OLE_LINK12"></a><a name="OLE_LINK11"><span
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52 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Boyd
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53 et al, PMID: 20161664. </span></a></p>
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54
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55 <p class=MsoNoSpacingCxSpLast style='text-align:justify'><span lang=EN-GB
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56 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each
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57 individual replicate the number of reads is reported. In addition, the number
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58 of coincidences between the different replicates of the same donor are reported.
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59 </span></p>
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61 <p class=MsoNormal>&nbsp;</p>
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63 </div>
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66
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67 </html>