annotate report_clonality/circos/ideogram.conf @ 5:bcec7bb4e089 draft

Uploaded
author davidvanzessen
date Mon, 12 Dec 2016 05:22:57 -0500
parents afe85eb6572e
children 124b7fd92a3e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
1
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
2 <ideogram>
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
3
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
4 <spacing>
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
5
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
6 default = 0.0025r
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
7
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
8 </spacing>
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
9
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
10 thickness = 50p
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
11 stroke_thickness = 0
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
12 # ideogram border color
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
13 stroke_color = black
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
14 fill = yes
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
15 # the default chromosome color is set here and any value
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
16 # defined in the karyotype file overrides it
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
17 fill_color = black
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
18
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
19 # fractional radius position of chromosome ideogram within image
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
20 radius = 0.85r
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
21 show_label = no
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
22 label_font = condensedbold
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
23 label_radius = 0.99r
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
24 label_size = 36
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
25
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
26 # cytogenetic bands
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
27 band_stroke_thickness = 2
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
28
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
29 # show_bands determines whether the outline of cytogenetic bands
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
30 # will be seen
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
31 show_bands = no
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
32 # in order to fill the bands with the color defined in the karyotype
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
33 # file you must set fill_bands
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
34 fill_bands = yes
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
35
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
36 </ideogram>
afe85eb6572e Uploaded
davidvanzessen
parents:
diff changeset
37