annotate report_clonality/naive_clonality.htm @ 22:c28da767799f draft

Uploaded
author davidvanzessen
date Fri, 27 Jan 2017 04:24:41 -0500
parents 5d11c9139a55
children 4d2a8f98a502
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
18
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
1 <html>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
2
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
3 <head>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
4 <meta http-equiv=Content-Type content="text/html; charset=windows-1252">
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
5 <meta name=Generator content="Microsoft Word 14 (filtered)">
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
6 <style>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
7 <!--
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
8 /* Font Definitions */
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
9 @font-face
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
10 {font-family:Calibri;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
11 panose-1:2 15 5 2 2 2 4 3 2 4;}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
12 /* Style Definitions */
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
13 p.MsoNormal, li.MsoNormal, div.MsoNormal
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
14 {margin-top:0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
15 margin-right:0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
16 margin-bottom:10.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
17 margin-left:0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
18 line-height:115%;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
19 font-size:11.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
20 font-family:"Calibri","sans-serif";}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
21 p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
22 {margin:0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
23 margin-bottom:.0001pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
24 font-size:11.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
25 font-family:"Calibri","sans-serif";}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
26 .MsoChpDefault
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
27 {font-family:"Calibri","sans-serif";}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
28 .MsoPapDefault
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
29 {margin-bottom:10.0pt;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
30 line-height:115%;}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
31 @page WordSection1
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
32 {size:8.5in 11.0in;
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
33 margin:1.0in 1.0in 1.0in 1.0in;}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
34 div.WordSection1
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
35 {page:WordSection1;}
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
36 -->
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
37 </style>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
38
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
39 </head>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
40
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
41 <body lang=EN-US>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
42
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
43 <div class=WordSection1>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
44
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
45 <p class=MsoNoSpacingCxSpFirst style='text-align:justify'><span
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
46 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each donor a
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
47 subtab is provided containing information on the sequence overlap between
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
48 replicates of the different replicates of one donor. Dependent on the settings
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
49 of the Shared clonal types / clonality filter a clonality score is given.  The clonality
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
50 score  is calculated according to the formula described by </span><a
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
51 name="OLE_LINK13"></a><a name="OLE_LINK12"></a><a name="OLE_LINK11"><span
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
52 lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Boyd
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
53 et al, PMID: 20161664. </span></a></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
54
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
55 <p class=MsoNoSpacingCxSpLast style='text-align:justify'><span lang=EN-GB
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
56 style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
57 individual replicate the number of reads is reported. In addition, the number
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
58 of coincidences between the different replicates of the same donor are reported.
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
59 </span></p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
60
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
61 <p class=MsoNormal>&nbsp;</p>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
62
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
63 </div>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
64
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
65 </body>
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
66
5d11c9139a55 Uploaded
davidvanzessen
parents:
diff changeset
67 </html>