|
0
|
1 # RGB color definition. Colors are refered to within configuration files
|
|
|
2 # by their name. In order to use a color, you must define it here.
|
|
|
3 #
|
|
|
4 # e.g. if you really must use 'bisque', then add
|
|
|
5 #
|
|
|
6 # bisque = 255,228,196
|
|
|
7 #
|
|
|
8 # Many useful colors are already defined. In general, given a HUE, these
|
|
|
9 # colors are defined
|
|
|
10 #
|
|
|
11 # vlHUE (very light HUE, e.g. vlred)
|
|
|
12 # lHUE (light HUE, e.g. red)
|
|
|
13 # HUE (e.g. red)
|
|
|
14 # dHUE (dark HUE, e.g. dred)
|
|
|
15 #
|
|
|
16 # In addition to hues, two other color groups are defined.
|
|
|
17 #
|
|
|
18 # - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which
|
|
|
19 # correspond to colors on ideogram bands
|
|
|
20 # - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA)
|
|
|
21
|
|
|
22 optblue = 55,133,221
|
|
|
23 optgreen = 55,221,125
|
|
|
24 optyellow = 221,215,55
|
|
|
25 optorange = 221,164,55
|
|
|
26 optred = 221,55,55
|
|
|
27 optviolet = 145,55,221
|
|
|
28 optpurple = 219,55,221
|
|
|
29
|
|
|
30 white = 255,255,255
|
|
|
31 vvvvlgrey = 250,250,250
|
|
|
32 vvvlgrey = 240,240,240
|
|
|
33 vvlgrey = 230,230,230
|
|
|
34 vlgrey = 220,220,220
|
|
|
35 lgrey = 210,210,210
|
|
|
36 grey = 200,200,200
|
|
|
37 dgrey = 170,170,170
|
|
|
38 vdgrey = 140,140,140
|
|
|
39 vvdgrey = 100,100,100
|
|
|
40 vvvdgrey = 70,70,70
|
|
|
41 vvvvdgrey = 40,40,40
|
|
|
42 black = 0,0,0
|
|
|
43
|
|
|
44 vlred = 255,193,200
|
|
|
45 lred = 255,122,137
|
|
|
46 red = 247,42,66
|
|
|
47 dred = 205,51,69
|
|
|
48
|
|
|
49 vlgreen = 204,255,218
|
|
|
50 lgreen = 128,255,164
|
|
|
51 green = 51,204,94
|
|
|
52 dgreen = 38,153,71
|
|
|
53
|
|
|
54 vlblue = 128,176,255
|
|
|
55 lblue = 64,137,255
|
|
|
56 blue = 54,116,217
|
|
|
57 dblue = 38,82,153
|
|
|
58
|
|
|
59 vlpurple= 242,128,255
|
|
|
60 lpurple = 236,64,255
|
|
|
61 purple = 189,51,204
|
|
|
62 dpurple = 118,32,128
|
|
|
63
|
|
|
64 vlyellow = 255,253,202
|
|
|
65 lyellow = 255,252,150
|
|
|
66 yellow = 255,255,0
|
|
|
67 dyellow = 191,186,48
|
|
|
68
|
|
|
69 lime = 186,255,0
|
|
|
70
|
|
|
71 vlorange = 255,228,193
|
|
|
72 lorange = 255,187,110
|
|
|
73 orange = 255,136,0
|
|
|
74 dorange = 221,143,55
|
|
|
75
|
|
|
76 # karyotype colors
|
|
|
77
|
|
|
78 gpos100 = 0,0,0
|
|
|
79 gpos = 0,0,0
|
|
|
80 gpos75 = 130,130,130
|
|
|
81 gpos66 = 160,160,160
|
|
|
82 gpos50 = 200,200,200
|
|
|
83 gpos33 = 210,210,210
|
|
|
84 gpos25 = 200,200,200
|
|
|
85 gvar = 220,220,220
|
|
|
86 gneg = 255,255,255
|
|
|
87 acen = 217,47,39
|
|
|
88 stalk = 100,127,164
|
|
|
89
|
|
|
90 # others
|
|
|
91
|
|
|
92 select = 135,177,255
|
|
|
93
|
|
|
94 # new york times cmyk-safe
|
|
|
95
|
|
|
96 # roygbiv - normal
|
|
|
97 nyt_blue = 104,152,178
|
|
|
98 nyt_green = 137,129,96
|
|
|
99 nyt_yellow = 241,221,117
|
|
|
100 nyt_orange = 230,146,57
|
|
|
101 nyt_red = 217,47,39
|
|
|
102
|
|
|
103 # chromosome color map (UCSC)
|
|
|
104
|
|
|
105 chr1 = 153,102,0
|
|
|
106 chr2 = 102,102,0
|
|
|
107 chr3 = 153,153,30
|
|
|
108 chr4 = 204,0,0
|
|
|
109 chr5 = 255,0,0
|
|
|
110 chr6 = 255,0,204
|
|
|
111 chr7 = 255,204,204
|
|
|
112 chr8 = 255,153,0
|
|
|
113 chr9 = 255,204,0
|
|
|
114 chr10 = 255,255,0
|
|
|
115 chr11 = 204,255,0
|
|
|
116 chr12 = 0,255,0
|
|
|
117 chr13 = 53,128,0
|
|
|
118 chr14 = 0,0,204
|
|
|
119 chr15 = 102,153,255
|
|
|
120 chr16 = 153,204,255
|
|
|
121 chr17 = 0,255,255
|
|
|
122 chr18 = 204,255,255
|
|
|
123 chr19 = 153,0,204
|
|
|
124 chr20 = 204,51,255
|
|
|
125 chr21 = 204,153,255
|
|
|
126 chr22 = 102,102,102
|
|
|
127 chr23 = 153,153,153
|
|
|
128 chrX = 153,153,153
|
|
|
129 chr24 = 204,204,204
|
|
|
130 chrY = 204,204,204
|
|
|
131 chrM = 204,204,153
|
|
|
132 chr0 = 204,204,153
|
|
|
133 chrUn = 121,204,61
|
|
|
134 chrNA = 255,255,255
|
|
|
135
|
|
|
136
|
|
|
137
|
|
|
138
|
|
|
139
|
|
|
140
|
|
|
141
|
|
|
142
|
