Mercurial > repos > davidvanzessen > argalaxy_tools

comparison report_clonality/r_wrapper.sh @ 25:94765af0db1f draft

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Uploaded
author davidvanzessen
date Thu, 09 Feb 2017 07:20:09 -0500
parents d5d203d38c8a
children 28fbbdfd7a87
comparison
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24:d5d203d38c8a 25:94765af0db1f
394 394
395 #echo "<tr><td>A frequency count of V Gene + J Gene + CDR3</td><td><a href='VJCDR3_count.txt'>Download</a></td></tr>" >> $outputFile 395 #echo "<tr><td>A frequency count of V Gene + J Gene + CDR3</td><td><a href='VJCDR3_count.txt'>Download</a></td></tr>" >> $outputFile
396 396
397 echo "<tr><td colspan='2' style='background-color:#E0E0E0;'>Clonality</td></tr>" >> $outputFile 397 echo "<tr><td colspan='2' style='background-color:#E0E0E0;'>Clonality</td></tr>" >> $outputFile
398 echo "<tr><td>The dataset used to calculate clonality score (Unique based on clonaltype, $clonalType)</td><td><a href='clonalityComplete.txt'>Download</a></td></tr>" >> $outputFile 398 echo "<tr><td>The dataset used to calculate clonality score (Unique based on clonaltype, $clonalType)</td><td><a href='clonalityComplete.txt'>Download</a></td></tr>" >> $outputFile
399 echo "<tr><td>Sequences that are present in more than one replicate</td><td><a href='clonaltypes_replicates.txt'>Download</a></td></tr>" >> $outputFile
399 400
400 echo "</table>" >> $outputFile 401 echo "</table>" >> $outputFile
401 402
402 cat $dir/naive_downloads.htm >> $outputFile 403 cat $dir/naive_downloads.htm >> $outputFile
403 404