Mercurial > repos > davidvanzessen > argalaxy_tools
comparison report_clonality/circos/etc_colors.conf @ 0:afe85eb6572e draft
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author | davidvanzessen |
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date | Mon, 29 Aug 2016 05:41:20 -0400 |
parents | |
children | 124b7fd92a3e |
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-1:000000000000 | 0:afe85eb6572e |
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1 # RGB color definition. Colors are refered to within configuration files | |
2 # by their name. In order to use a color, you must define it here. | |
3 # | |
4 # e.g. if you really must use 'bisque', then add | |
5 # | |
6 # bisque = 255,228,196 | |
7 # | |
8 # Many useful colors are already defined. In general, given a HUE, these | |
9 # colors are defined | |
10 # | |
11 # vlHUE (very light HUE, e.g. vlred) | |
12 # lHUE (light HUE, e.g. red) | |
13 # HUE (e.g. red) | |
14 # dHUE (dark HUE, e.g. dred) | |
15 # | |
16 # In addition to hues, two other color groups are defined. | |
17 # | |
18 # - cytogenetic band colors (e.g. gposNNN, acen, stalk, etc.) which | |
19 # correspond to colors on ideogram bands | |
20 # - UCSC chromosome color palette (e.g. chrNN, chrUn, chrNA) | |
21 | |
22 optblue = 55,133,221 | |
23 optgreen = 55,221,125 | |
24 optyellow = 221,215,55 | |
25 optorange = 221,164,55 | |
26 optred = 221,55,55 | |
27 optviolet = 145,55,221 | |
28 optpurple = 219,55,221 | |
29 | |
30 white = 255,255,255 | |
31 vvvvlgrey = 250,250,250 | |
32 vvvlgrey = 240,240,240 | |
33 vvlgrey = 230,230,230 | |
34 vlgrey = 220,220,220 | |
35 lgrey = 210,210,210 | |
36 grey = 200,200,200 | |
37 dgrey = 170,170,170 | |
38 vdgrey = 140,140,140 | |
39 vvdgrey = 100,100,100 | |
40 vvvdgrey = 70,70,70 | |
41 vvvvdgrey = 40,40,40 | |
42 black = 0,0,0 | |
43 | |
44 vlred = 255,193,200 | |
45 lred = 255,122,137 | |
46 red = 247,42,66 | |
47 dred = 205,51,69 | |
48 | |
49 vlgreen = 204,255,218 | |
50 lgreen = 128,255,164 | |
51 green = 51,204,94 | |
52 dgreen = 38,153,71 | |
53 | |
54 vlblue = 128,176,255 | |
55 lblue = 64,137,255 | |
56 blue = 54,116,217 | |
57 dblue = 38,82,153 | |
58 | |
59 vlpurple= 242,128,255 | |
60 lpurple = 236,64,255 | |
61 purple = 189,51,204 | |
62 dpurple = 118,32,128 | |
63 | |
64 vlyellow = 255,253,202 | |
65 lyellow = 255,252,150 | |
66 yellow = 255,255,0 | |
67 dyellow = 191,186,48 | |
68 | |
69 lime = 186,255,0 | |
70 | |
71 vlorange = 255,228,193 | |
72 lorange = 255,187,110 | |
73 orange = 255,136,0 | |
74 dorange = 221,143,55 | |
75 | |
76 # karyotype colors | |
77 | |
78 gpos100 = 0,0,0 | |
79 gpos = 0,0,0 | |
80 gpos75 = 130,130,130 | |
81 gpos66 = 160,160,160 | |
82 gpos50 = 200,200,200 | |
83 gpos33 = 210,210,210 | |
84 gpos25 = 200,200,200 | |
85 gvar = 220,220,220 | |
86 gneg = 255,255,255 | |
87 acen = 217,47,39 | |
88 stalk = 100,127,164 | |
89 | |
90 # others | |
91 | |
92 select = 135,177,255 | |
93 | |
94 # new york times cmyk-safe | |
95 | |
96 # roygbiv - normal | |
97 nyt_blue = 104,152,178 | |
98 nyt_green = 137,129,96 | |
99 nyt_yellow = 241,221,117 | |
100 nyt_orange = 230,146,57 | |
101 nyt_red = 217,47,39 | |
102 | |
103 # chromosome color map (UCSC) | |
104 | |
105 chr1 = 153,102,0 | |
106 chr2 = 102,102,0 | |
107 chr3 = 153,153,30 | |
108 chr4 = 204,0,0 | |
109 chr5 = 255,0,0 | |
110 chr6 = 255,0,204 | |
111 chr7 = 255,204,204 | |
112 chr8 = 255,153,0 | |
113 chr9 = 255,204,0 | |
114 chr10 = 255,255,0 | |
115 chr11 = 204,255,0 | |
116 chr12 = 0,255,0 | |
117 chr13 = 53,128,0 | |
118 chr14 = 0,0,204 | |
119 chr15 = 102,153,255 | |
120 chr16 = 153,204,255 | |
121 chr17 = 0,255,255 | |
122 chr18 = 204,255,255 | |
123 chr19 = 153,0,204 | |
124 chr20 = 204,51,255 | |
125 chr21 = 204,153,255 | |
126 chr22 = 102,102,102 | |
127 chr23 = 153,153,153 | |
128 chrX = 153,153,153 | |
129 chr24 = 204,204,204 | |
130 chrY = 204,204,204 | |
131 chrM = 204,204,153 | |
132 chr0 = 204,204,153 | |
133 chrUn = 121,204,61 | |
134 chrNA = 255,255,255 | |
135 | |
136 | |
137 | |
138 | |
139 | |
140 | |
141 | |
142 |