comparison report_clonality/r_wrapper.sh @ 35:dc6c53a11d7d draft

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34:7b8147b61a34

	echo "<div class='tabbertab' title='Circos'><div class='tabber'>" >> $outputFile
	for sample in $samples; do
		echo "<div class='tabbertab' title='$sample'><table border='1'><center>" >> $outputFile
		if [[ "$useD" == "true" ]] ; then
			echo "<tr><td>V-D</td><td><a href='circosVD_${sample}.pdf'><img src='circosVD_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
		fi
		echo "<tr><td>V-J</td><td><a href='circosVJ_${sample}.pdf'><img src='circosVJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
		if [[ "$useD" == "true" ]] ; then
			echo "<tr><td>D-J</td><td><a href='circosDJ_${sample}.pdf'><img src='circosDJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
		fi
		echo "<center></table></div>" >> $outputFile
		count=$((count+1))
	done
	

35:dc6c53a11d7d

	echo "<div class='tabbertab' title='Circos'><div class='tabber'>" >> $outputFile
	for sample in $samples; do
		echo "<div class='tabbertab' title='$sample'><table border='1'><center>" >> $outputFile
		if [[ "$useD" == "true" ]] ; then
			echo "<tr><td>V-D</td><td><a href='circosVD_${sample}.svg'><img src='circosVD_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
		fi
		echo "<tr><td>V-J</td><td><a href='circosVJ_${sample}.svg'><img src='circosVJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
		if [[ "$useD" == "true" ]] ; then
			echo "<tr><td>D-J</td><td><a href='circosDJ_${sample}.svg'><img src='circosDJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
		fi
		echo "<center></table></div>" >> $outputFile
		count=$((count+1))
	done