comparison report_clonality/r_wrapper.sh @ 23:e2fbdfacec1d draft

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22:c28da767799f

			echo "in new"
			clonalityScore="$(cat $outputDir/lymphclon_clonality_${sample}.txt)"
			echo "<div class='tabbertab' title='$sample'>" >> $outputFile
			echo "Lymphclon clonality score: <br />$clonalityScore<br /><br />" >> $outputFile
			echo "<table border = 1>" >> $outputFile
			while IFS=, read type count
			do
				echo "<tr><td>$type</td><td>$count</td></tr>" >> $outputFile
			done < $outputDir/lymphclon_coincidences_$sample.txt
			echo "</table></div>" >> $outputFile
		fi

23:e2fbdfacec1d

			echo "in new"
			clonalityScore="$(cat $outputDir/lymphclon_clonality_${sample}.txt)"
			echo "<div class='tabbertab' title='$sample'>" >> $outputFile
			echo "Lymphclon clonality score: <br />$clonalityScore<br /><br />" >> $outputFile
			echo "<table border = 1>" >> $outputFile
			while read type count
			do
				echo "<tr><td>$type</td><td>$count</td></tr>" >> $outputFile
			done < $outputDir/lymphclon_coincidences_$sample.txt
			echo "</table></div>" >> $outputFile
		fi