Mercurial > repos > davidvanzessen > argalaxy_tools
diff imgt_loader/imgt_loader.sh @ 40:106275b54470 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Tue, 30 May 2017 07:26:33 -0400 |
| parents | 798b62942b4b |
| children | 124b7fd92a3e |
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--- a/imgt_loader/imgt_loader.sh Mon Apr 24 09:39:59 2017 -0400 +++ b/imgt_loader/imgt_loader.sh Tue May 30 07:26:33 2017 -0400 @@ -66,6 +66,9 @@ find $PWD/$name/files -iname "5_*" -exec cat {} + > $PWD/$name/aa.txt find $PWD/$name/files -iname "6_*" -exec cat {} + > $PWD/$name/junction.txt +echo "summ.txt `cat $PWD/$name/summ.txt | wc -l`" +echo "aa.txt `cat $PWD/$name/aa.txt | wc -l`" + #python $dir/imgt_loader.py --summ $PWD/$name/summ.txt --aa $PWD/$name/aa.txt --junction $PWD/$name/junction.txt --output $output Rscript --verbose $dir/imgt_loader.r $PWD/$name/summ.txt $PWD/$name/sequences.txt $PWD/$name/aa.txt $PWD/$name/junction.txt $PWD/$name/gapped_aa.txt $output 2>&1