diff tests/test_imgt.py @ 57:33412e85e669 draft

"planemo upload commit 2a9ed3adf321f18047c3746735a5e79a4586798d"

--- a/tests/test_imgt.py	Tue Dec 14 12:45:47 2021 +0000
+++ b/tests/test_imgt.py	Wed Feb 02 10:50:01 2022 +0000
@@ -77,6 +77,12 @@
     docker_cmd = ["docker", "run", "-v", f"{temp_dir}:{temp_dir}",
                   "-v", f"{sample}:{sample}",
                   "-w", str(working_dir),
+                  # Run as current user which allows deletion of files.
+                  # It also mitigates some security considerations
+                  "-u", f"{os.getuid()}:{os.getgid()}",
+                  # Run with default seccomp profile to mitigate mitigation slowdown
+                  # http://mamememo.blogspot.com/2020/05/cpu-intensive-rubypython-code-runs.html
+                  "--security-opt", "seccomp=unconfined",
                   get_container()] + cmd
     with open(temp_dir / "stderr", "wt") as stderr_file:
         with open(temp_dir / "stdout", "wt") as stdout_file: