Mercurial > repos > davidvanzessen > argalaxy_tools

diff igparse.xml @ 0:afe85eb6572e draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author davidvanzessen
date Mon, 29 Aug 2016 05:41:20 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/igparse.xml	Mon Aug 29 05:41:20 2016 -0400
@@ -0,0 +1,15 @@
+<tool id="igblastparser_igg" name="igBLASTparser" version="0.2.0">
+	<description> </description>
+	<command interpreter="perl">
+		igblastparser/igparse.pl $input 0 2>/dev/null | grep -v "D:" | cut -f2- > $output
+	</command>
+	<inputs>
+		<param name="input" type="data" format="text" label="igBLASTn report"/>
+	</inputs>
+	<outputs>
+		<data name="output" format="tabular" label="${input.name}-parsed" />
+	</outputs>
+	<help>
+		Step 2 of the Immune Repertoire tools, extracts the relevant information needed from the reports generated by igblast (Step 1)
+	</help>
+</tool>