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diff report_clonality/naive_junction.htm @ 27:b539aeb75980 draft

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author davidvanzessen
date Tue, 28 Feb 2017 08:10:34 -0500
parents 5d11c9139a55
children 4d2a8f98a502
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--- a/report_clonality/naive_junction.htm	Mon Feb 13 09:08:46 2017 -0500
+++ b/report_clonality/naive_junction.htm	Tue Feb 28 08:10:34 2017 -0500
@@ -1,89 +1,201 @@
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 </head>
 
-<body lang=EN-US>
+<body lang=EN-US style='tab-interval:.5in'>
 
 <div class=WordSection1>
 
-<p class=MsoNormalCxSpFirst style='text-align:justify'><b><span
-style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Tables:</span></b></p>
+<p class=MsoNormal style='text-align:justify'><b><u><span style='font-size:
+12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Junction
+analysis tab </span></u></b></p>
 
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><u><span
-style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Productive
-mean table</span></u></p>
+<p class=MsoNormal style='text-align:justify'><b><span style='font-size:12.0pt;
+line-height:115%;font-family:"Times New Roman","serif"'>Tables:</span></b></p>
+
+<p class=MsoNormal style='text-align:justify'><span style='font-size:12.0pt;
+line-height:115%;font-family:"Times New Roman","serif"'>The unique
+rearrangements are separated in sequences that contain <span class=GramE>both a</span>
+V, D and J gene and sequences that contain only a V and J gene.</span></p>
 
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><span style='font-size:
-12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports for each
-donor the number of productive sequences and the mean number of deletions,
-N-nucleotides and P-nucleotides. For explanation about the different deletions
-and N and P nucleotides see figure above. </span></p>
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive mean
+tables<o:p></o:p></span></u></p>
 
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><u><span
-style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Unproductive
-mean table</span></u></p>
+<p class=MsoNormal style='text-align:justify'><span class=GramE><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
+for each donor the number of productive sequences and the mean number of
+deletions, N-nucleotides and P-nucleotides.</span></span><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
+For explanation about the different deletions and N and P nucleotides see
+figure above. </span></p>
+
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive
+mean table<o:p></o:p></span></u></p>
 
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><span style='font-size:
-12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports for each
-donor the number of unproductive sequences and the mean number of deletions,
-N-nucleotides and P-nucleotides. For explanation about the different deletions
-and N and P nucleotides see figure above. </span></p>
+<p class=MsoNormal style='text-align:justify'><span class=GramE><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
+for each donor the number of unproductive sequences and the mean number of
+deletions, N-nucleotides and P-nucleotides.</span></span><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
+For explanation about the different deletions and N and P nucleotides see
+figure above. </span></p>
 
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><u><span
-style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Productive
-median table</span></u></p>
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive
+median table<o:p></o:p></span></u></p>
 
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><span style='font-size:
-12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports for each
-donor the number of productive sequences and the median number of deletions,
-N-nucleotides and P-nucleotides. For explanation about the different deletions
-and N and P nucleotides see figure above. </span></p>
+<p class=MsoNormal style='text-align:justify'><span class=GramE><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
+for each donor the number of productive sequences and the median number of
+deletions, N-nucleotides and P-nucleotides.</span></span><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
+For explanation about the different deletions and N and P nucleotides see
+figure above. </span></p>
 
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><u><span
-style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Unproductive
-median table</span></u></p>
+<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
+justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
+font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive
+median table<o:p></o:p></span></u></p>
 
-<p class=MsoNormalCxSpMiddle style='text-align:justify'><span style='font-size:
-12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports for each
-donor the number of unproductive sequences and the median number of deletions,
-N-nucleotides and P-nucleotides. For explanation about the different deletions
-and N and P nucleotides see figure above. </span></p>
+<p class=MsoNormal style='text-align:justify'><span class=GramE><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
+for each donor the number of unproductive sequences and the median number of
+deletions, N-nucleotides and P-nucleotides.</span></span><span
+style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
+For explanation about the different deletions and N and P nucleotides see
+figure above. </span></p>
 
 <p class=MsoNormal>&nbsp;</p>