Mercurial > repos > davidvanzessen > argalaxy_tools

diff complete.sh @ 24:d5d203d38c8a draft

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Uploaded
author davidvanzessen
date Wed, 01 Feb 2017 09:48:38 -0500
parents 54f6756bacb1
children 124b7fd92a3e
line wrap: on
line diff
--- a/complete.sh	Fri Jan 27 04:29:43 2017 -0500
+++ b/complete.sh	Wed Feb 01 09:48:38 2017 -0500
@@ -19,6 +19,10 @@
 #unzip $dir/database.zip -d $PWD/igblastdatabase/
 #export IGDATA=$PWD/igblastdatabase/
 
+echo "python: `which python`"
+echo "R: `which R`"
+echo "Rscript: `which Rscript`"
+
 id=""
 forwardSlash="/"
 mergerInput=()
@@ -39,6 +43,7 @@
 	f=$(file $current)
 	zipType="Zip archive"
 	zxType="XZ compressed data"
+	echo "filetype of ${id}: $f"
   	if [[ "$f" == *"$zipType"* ]] || [[ "$f" == *"$zxType"* ]]
 	then
 		echo "<tr><td>Sample $count of patient $id is an archive file, using IMGT Loader</td></tr>" >> $html