Mercurial > repos > davidvanzessen > argalaxy_tools

diff igblast/igblast.sh @ 51:e35b82f31ec7 draft

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Uploaded
author davidvanzessen
date Thu, 08 Aug 2019 07:40:36 -0400
parents 4d2a8f98a502
children 124b7fd92a3e
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line diff
--- a/igblast/igblast.sh	Wed Jul 10 03:38:24 2019 -0400
+++ b/igblast/igblast.sh	Thu Aug 08 07:40:36 2019 -0400
@@ -23,6 +23,6 @@
 
 echo "$input $species $locus $output"
 
-java -Xmx16G -jar $IGBLASTWRP/igblastwrp.jar -p 4 -S $species -R $locus ${input} $PWD/blasted_output 2>&1
+java -Xmx16G -jar $dir/igblastwrp.jar -p 4 -S $species -R $locus ${input} $PWD/blasted_output 2>&1
 
 Rscript --verbose $dir/igblast.r "$PWD/blasted_output.L2.txt" "$output" 2>&1