Mercurial > repos > davidvanzessen > argalaxy_tools
view report_clonality/naive_clonality.htm @ 41:a70dbcfa5d8a draft
Uploaded
author | davidvanzessen |
---|---|
date | Thu, 06 Jul 2017 09:07:52 -0400 |
parents | 5d11c9139a55 |
children | 4d2a8f98a502 |
line wrap: on
line source
<html> <head> <meta http-equiv=Content-Type content="text/html; charset=windows-1252"> <meta name=Generator content="Microsoft Word 14 (filtered)"> <style> <!-- /* Font Definitions */ @font-face {font-family:Calibri; panose-1:2 15 5 2 2 2 4 3 2 4;} /* Style Definitions */ p.MsoNormal, li.MsoNormal, div.MsoNormal {margin-top:0in; margin-right:0in; margin-bottom:10.0pt; margin-left:0in; line-height:115%; font-size:11.0pt; font-family:"Calibri","sans-serif";} p.MsoNoSpacing, li.MsoNoSpacing, div.MsoNoSpacing {margin:0in; margin-bottom:.0001pt; font-size:11.0pt; font-family:"Calibri","sans-serif";} .MsoChpDefault {font-family:"Calibri","sans-serif";} .MsoPapDefault {margin-bottom:10.0pt; line-height:115%;} @page WordSection1 {size:8.5in 11.0in; margin:1.0in 1.0in 1.0in 1.0in;} div.WordSection1 {page:WordSection1;} --> </style> </head> <body lang=EN-US> <div class=WordSection1> <p class=MsoNoSpacingCxSpFirst style='text-align:justify'><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each donor a subtab is provided containing information on the sequence overlap between replicates of the different replicates of one donor. Dependent on the settings of the Shared clonal types / clonality filter a clonality score is given. The clonality score is calculated according to the formula described by </span><a name="OLE_LINK13"></a><a name="OLE_LINK12"></a><a name="OLE_LINK11"><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'>Boyd et al, PMID: 20161664. </span></a></p> <p class=MsoNoSpacingCxSpLast style='text-align:justify'><span lang=EN-GB style='font-size:12.0pt;font-family:"Times New Roman","serif"'>For each individual replicate the number of reads is reported. In addition, the number of coincidences between the different replicates of the same donor are reported. </span></p> <p class=MsoNormal> </p> </div> </body> </html>