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"planemo upload commit 1a7731bb4fe2e80fb1fdc88121783068af3edb08"
author rhpvorderman
date Fri, 21 Apr 2023 10:04:39 +0000
parents 81b3eb11ed2c
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<p class=MsoNormal style='text-align:justify'><b><u><span style='font-size:
12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Junction
analysis tab </span></u></b></p>

<p class=MsoNormal style='text-align:justify'><b><span style='font-size:12.0pt;
line-height:115%;font-family:"Times New Roman","serif"'>Tables:</span></b></p>

<p class=MsoNormal style='text-align:justify'><span style='font-size:12.0pt;
line-height:115%;font-family:"Times New Roman","serif"'>The unique
rearrangements are separated in sequences that contain <span class=GramE>both a</span>
V, D and J gene and sequences that contain only a V and J gene.</span></p>

<p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align:
justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive mean
tables<o:p></o:p></span></u></p>

<p class=MsoNormal style='text-align:justify'><span class=GramE><span
style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
for each donor the number of productive sequences and the mean number of
deletions, N-nucleotides and P-nucleotides.</span></span><span
style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
For explanation about the different deletions and N and P nucleotides see
figure above. </span></p>

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justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive
mean table<o:p></o:p></span></u></p>

<p class=MsoNormal style='text-align:justify'><span class=GramE><span
style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
for each donor the number of unproductive sequences and the mean number of
deletions, N-nucleotides and P-nucleotides.</span></span><span
style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
For explanation about the different deletions and N and P nucleotides see
figure above. </span></p>

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justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive
median table<o:p></o:p></span></u></p>

<p class=MsoNormal style='text-align:justify'><span class=GramE><span
style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
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deletions, N-nucleotides and P-nucleotides.</span></span><span
style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
For explanation about the different deletions and N and P nucleotides see
figure above. </span></p>

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justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt;
font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive
median table<o:p></o:p></span></u></p>

<p class=MsoNormal style='text-align:justify'><span class=GramE><span
style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports
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deletions, N-nucleotides and P-nucleotides.</span></span><span
style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>
For explanation about the different deletions and N and P nucleotides see
figure above. </span></p>

<p class=MsoNormal>&nbsp;</p>

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