Mercurial > repos > davidvanzessen > argalaxy_tools
view report_clonality/naive_junction.htm @ 49:df3645fb1bc0 draft
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author | davidvanzessen |
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date | Wed, 10 Jul 2019 03:37:52 -0400 |
parents | 4d2a8f98a502 |
children | 124b7fd92a3e |
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<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40"> <head> <meta http-equiv=Content-Type content="text/html; charset=windows-1252"> <meta name=ProgId content=Word.Document> <meta name=Generator content="Microsoft Word 14"> <meta name=Originator content="Microsoft Word 14"> <link rel=File-List href="Junction%20analysis%20tab_files/filelist.xml"> <link rel=themeData href="Junction%20analysis%20tab_files/themedata.thmx"> <style> <!-- /* Font Definitions */ @font-face {font-family:Calibri; panose-1:2 15 5 2 2 2 4 3 2 4; mso-font-charset:0; mso-generic-font-family:swiss; mso-font-pitch:variable; mso-font-signature:-536870145 1073786111 1 0 415 0;} /* Style Definitions */ p.MsoNormal, li.MsoNormal, div.MsoNormal {mso-style-unhide:no; mso-style-qformat:yes; mso-style-parent:""; margin-top:0in; margin-right:0in; 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mso-style-unhide:no; mso-margin-top-alt:auto; margin-right:0in; margin-bottom:10.0pt; margin-left:0in; line-height:115%; mso-pagination:widow-orphan; font-size:12.0pt; font-family:"Times New Roman","serif"; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast;} span.GramE {mso-style-name:""; mso-gram-e:yes;} .MsoChpDefault {mso-style-type:export-only; mso-default-props:yes; font-size:10.0pt; mso-ansi-font-size:10.0pt; mso-bidi-font-size:10.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-hansi-font-family:Calibri;} .MsoPapDefault {mso-style-type:export-only; margin-bottom:10.0pt; line-height:115%;} @page WordSection1 {size:8.5in 11.0in; margin:1.0in 1.0in 1.0in 1.0in; mso-header-margin:.5in; mso-footer-margin:.5in; mso-paper-source:0;} div.WordSection1 {page:WordSection1;} --> </style> <!--[if gte mso 10]> <style> /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-parent:""; mso-padding-alt:0in 5.4pt 0in 5.4pt; mso-para-margin-top:0in; mso-para-margin-right:0in; mso-para-margin-bottom:10.0pt; mso-para-margin-left:0in; line-height:115%; mso-pagination:widow-orphan; font-size:10.0pt; font-family:"Calibri","sans-serif";} </style> <![endif]--><!--[if gte mso 9]><xml> <o:shapedefaults v:ext="edit" spidmax="1026"/> </xml><![endif]--><!--[if gte mso 9]><xml> <o:shapelayout v:ext="edit"> <o:idmap v:ext="edit" data="1"/> </o:shapelayout></xml><![endif]--> </head> <body lang=EN-US style='tab-interval:.5in'> <div class=WordSection1> <p class=MsoNormal style='text-align:justify'><b><u><span style='font-size: 12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Junction analysis tab </span></u></b></p> <p class=MsoNormal style='text-align:justify'><b><span style='font-size:12.0pt; line-height:115%;font-family:"Times New Roman","serif"'>Tables:</span></b></p> <p class=MsoNormal style='text-align:justify'><span style='font-size:12.0pt; line-height:115%;font-family:"Times New Roman","serif"'>The unique rearrangements are separated in sequences that contain <span class=GramE>both a</span> V, D and J gene and sequences that contain only a V and J gene.</span></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt; font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive mean tables<o:p></o:p></span></u></p> <p class=MsoNormal style='text-align:justify'><span class=GramE><span style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports for each donor the number of productive sequences and the mean number of deletions, N-nucleotides and P-nucleotides.</span></span><span style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'> For explanation about the different deletions and N and P nucleotides see figure above. </span></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt; font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive mean table<o:p></o:p></span></u></p> <p class=MsoNormal style='text-align:justify'><span class=GramE><span style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports for each donor the number of unproductive sequences and the mean number of deletions, N-nucleotides and P-nucleotides.</span></span><span style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'> For explanation about the different deletions and N and P nucleotides see figure above. </span></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt; font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Productive median table<o:p></o:p></span></u></p> <p class=MsoNormal style='text-align:justify'><span class=GramE><span style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports for each donor the number of productive sequences and the median number of deletions, N-nucleotides and P-nucleotides.</span></span><span style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'> For explanation about the different deletions and N and P nucleotides see figure above. </span></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;text-align: justify;line-height:normal'><u><span lang=EN-GB style='font-size:12.0pt; font-family:"Times New Roman","serif";mso-ansi-language:EN-GB'>Unproductive median table<o:p></o:p></span></u></p> <p class=MsoNormal style='text-align:justify'><span class=GramE><span style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>Reports for each donor the number of unproductive sequences and the median number of deletions, N-nucleotides and P-nucleotides.</span></span><span style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'> For explanation about the different deletions and N and P nucleotides see figure above. </span></p> <p class=MsoNormal> </p> </div> </body> </html>