# HG changeset patch # User davidvanzessen # Date 1482242811 18000 # Node ID 21ca9391a3b7aae3e12341ee39178f529205c2f2 # Parent 02efa5764a0a10abdf5a6a9820f82976123d3482 Uploaded diff -r 02efa5764a0a -r 21ca9391a3b7 report_clonality/r_wrapper.sh --- a/report_clonality/r_wrapper.sh Tue Dec 20 08:36:12 2016 -0500 +++ b/report_clonality/r_wrapper.sh Tue Dec 20 09:06:51 2016 -0500 @@ -193,26 +193,26 @@ echo "Clonality Score: $clonalityScore" >> $outputFile #replicate,reads,squared - echo "Replicate IDNumber of ReadsReads Squared" >> $outputFile + echo "Replicate IDNumber of Reads" >> $outputFile while IFS=, read replicate reads squared do - echo "$replicate$reads$squared" >> $outputFile + echo "$replicate$reads" >> $outputFile done < $outputDir/ReplicateReads_$sample.csv #sum of reads and reads squared while IFS=, read readsSum squaredSum do - echo "Sum$readsSum$squaredSum" >> $outputFile + echo "Sum$readsSum" >> $outputFile done < $outputDir/ReplicateSumReads_$sample.csv #overview - echo "Coincidence TypeRaw Coincidence FreqCoincidence WeightCoincidences, Weighted" >> $outputFile + echo "Coincidence TypeRaw Coincidence Freq" >> $outputFile while IFS=, read type count weight weightedCount do if [[ "$type" -eq "1" ]]; then - echo "$type$count$weight$weightedCount" >> $outputFile + echo "$type$count" >> $outputFile else - echo "$type$count$weight$weightedCount" >> $outputFile + echo "$type$count" >> $outputFile fi done < $outputDir/ClonalityOverView_$sample.csv