# HG changeset patch
# User davidvanzessen
# Date 1489488698 14400
# Node ID 3a76faa53c596c3ecd2b7843752776b0be9282ba
# Parent  b50965edac240ea09ede1d916ab9af83f09c6cfe
Uploaded

diff -r b50965edac24 -r 3a76faa53c59 imgt_loader/imgt_loader.r
--- a/imgt_loader/imgt_loader.r	Thu Mar 09 10:48:14 2017 -0500
+++ b/imgt_loader/imgt_loader.r	Tue Mar 14 06:51:38 2017 -0400
@@ -31,10 +31,12 @@
 out[,"CDR2.Seq"] = aa[,"CDR2.IMGT"]
 out[,"CDR2.Length"] = summ[,"CDR2.IMGT.length"]
 
-out[,"CDR3.Seq"] = aa[,"CDR3.IMGT"]
+out[,"CDR3.Seq"] = gapped.aa[,"CDR3.IMGT"]
 out[,"CDR3.Length"] = summ[,"CDR3.IMGT.length"]
 
-out[,"CDR3.Seq.DNA"] = gapped.aa[,"CDR3.IMGT"]
+out[,"CDR3.IMGT"] = out[,"CDR3.Seq"]
+
+out[,"CDR3.Seq.DNA"] = sequences[,"CDR3.IMGT"]
 out[,"CDR3.Length.DNA"] = nchar(as.character(out[,"CDR3.Seq.DNA"]))
 out[,"Strand"] = summ[,"Orientation"]
 out[,"CDR3.Found.How"] = "a"
diff -r b50965edac24 -r 3a76faa53c59 report_clonality/circos/fonts.conf~
--- a/report_clonality/circos/fonts.conf~	Thu Mar 09 10:48:14 2017 -0500
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,8 +0,0 @@
-
-default       = LTe50046.ttf
-normal        = LTe50046.ttf
-bold          = LTe50048.ttf
-condensed     = LTe50050.ttf
-condensedbold = LTe50054.ttf
-mono          = pragmata.ttf
-glyph         = wingding.ttf
diff -r b50965edac24 -r 3a76faa53c59 report_clonality/circos/housekeeping.conf~