# HG changeset patch
# User davidvanzessen
# Date 1490705494 14400
# Node ID dc6c53a11d7d023c309b74be42c1e18884109d33
# Parent  7b8147b61a34bc0590f9fbc9f956bdccfaab083b
Uploaded

diff -r 7b8147b61a34 -r dc6c53a11d7d report_clonality/r_wrapper.sh
--- a/report_clonality/r_wrapper.sh	Tue Mar 28 08:48:29 2017 -0400
+++ b/report_clonality/r_wrapper.sh	Tue Mar 28 08:51:34 2017 -0400
@@ -196,11 +196,11 @@
 	for sample in $samples; do
 		echo "<div class='tabbertab' title='$sample'><table border='1'><center>" >> $outputFile
 		if [[ "$useD" == "true" ]] ; then
-			echo "<tr><td>V-D</td><td><a href='circosVD_${sample}.pdf'><img src='circosVD_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
+			echo "<tr><td>V-D</td><td><a href='circosVD_${sample}.svg'><img src='circosVD_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
 		fi
-		echo "<tr><td>V-J</td><td><a href='circosVJ_${sample}.pdf'><img src='circosVJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
+		echo "<tr><td>V-J</td><td><a href='circosVJ_${sample}.svg'><img src='circosVJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
 		if [[ "$useD" == "true" ]] ; then
-			echo "<tr><td>D-J</td><td><a href='circosDJ_${sample}.pdf'><img src='circosDJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
+			echo "<tr><td>D-J</td><td><a href='circosDJ_${sample}.svg'><img src='circosDJ_${sample}.png' width='700' height='700'/></td></tr>" >> $outputFile
 		fi
 		echo "<center></table></div>" >> $outputFile
 		count=$((count+1))